LOCUS       AE015928                6390 bp    DNA     linear   BCT 31-JAN-2014
DEFINITION  Bacteroides thetaiotaomicron VPI-5482, complete genome.
ACCESSION   AE015928
VERSION     AE015928.1
DBLINK      BioProject: PRJNA399
            BioSample: SAMN02604314
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron VPI-5482
  ORGANISM  Bacteroides thetaiotaomicron VPI-5482
            Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1  (bases 1 to 6390)
  AUTHORS   Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,
            Chiang,H.C., Hooper,L.V. and Gordon,J.I.
  TITLE     A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis
  JOURNAL   Science 299 (5615), 2074-2076 (2003)
   PUBMED   12663928
REFERENCE   2  (bases 1 to 6390)
  AUTHORS   Mahowald,M.A., Rey,F.E., Seedorf,H., Turnbaugh,P.J., Fulton,R.S.,
            Wollam,A., Shah,N., Wang,C., Magrini,V., Wilson,R.K., Cantarel,B.L.,
            Coutinho,P.M., Henrissat,B., Crock,L.W., Russell,A.,
            Verberkmoes,N.C., Hettich,R.L. and Gordon,J.I.
  TITLE     Characterizing a model human gut microbiota composed of members of
            its two dominant bacterial phyla
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 106 (14), 5859-5864 (2009)
   PUBMED   19321416
REFERENCE   3  (bases 1 to 6390)
  AUTHORS   Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K.,
            Chiang,H.C., Hooper,L.V. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-OCT-2002) Department of Molecular Biology and
            Pharmacology, Washington University in St. Louis, 660 S. Euclid, St.
            Louis, MO 63110, USA
REFERENCE   4  (bases 1 to 6390)
  AUTHORS   Mahowald,M.A. and Gordon,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2009) Center for Genome Science, Washington
            University in St. Louis, 4444 Forest Park Ave., St. Louis, MO 63108,
            USA
  REMARK    Protein update by submitter
COMMENT     On or before Jan 5, 2006 this sequence version replaced AE016926.1,
            AE016927.1, AE016928.1, AE016929.1, AE016930.1, AE016931.1,
            AE016932.1, AE016933.1, AE016934.1, AE016935.1, AE016936.1,
            AE016937.1, AE016938.1, AE016939.1, AE016940.1, AE016941.1,
            AE016942.1, AE016943.1, AE016944.1, AE016945.1, AE016946.1.
FEATURES             Location/Qualifiers
     source          1..6390
                     /organism="Bacteroides thetaiotaomicron VPI-5482"
                     /mol_type="genomic DNA"
                     /strain="VPI-5482"
                     /type_material="type strain of Bacteroides
                     thetaiotaomicron"
                     /db_xref="taxon:226186"
     gene            1..1362
                     /locus_tag="BT_3663"
                     /old_locus_tag="BT3663"
     CDS             1..1362
                     /locus_tag="BT_3663"
                     /old_locus_tag="BT3663"
                     /codon_start=1
                     /transl_table=11
                     /product="GH43_10"
                     /protein_id="AAO78768.1"
                     /translation="MVIIHSKDLVNWTIKGHVVSDLRQISEEMNWTRMNRYGRGIWAGA
                     IRYYQGKFYVYFGTPDEGYFMSTATDPAGPWEPLHCVKAEKGWDDCCPFFDDDGQLYFV
                     GTHFADKYKTYLYRMTPDGKTLIENSKILINEGYGREASKLYKINGTYYHFFSEVKNGG
                     RYIMMQRSSSITGPYLERKQLSHVQREYNEPNQGGLVEGPDRKWYFFTHHGTGDWAGRI
                     ASLLPVYWVDGWPIIGEVGQDGIGTMVWQAAKPSNEYPVRTPQSSDDFSKSVLSPQWEW
                     NYQPRDEMWSLTERPGNLRLKAFRPLVTDNLLKAGNTLTQRCFRTNKNEVIVKMNIEGM
                     VDGQKAGLCHYSKSYAMVGVRQSGKDRNLEFQTNKEKITGPAIKGNKVWIKSVWGLDGK
                     SQFSYSTDGRKFTPFGEVYQLEWGYYRGSRIGIYCFNNIADAGYIDVDEFIYLY"
     gene            1374..3290
                     /locus_tag="BT_3664"
                     /old_locus_tag="BT3664"
     CDS             1374..3290
                     /locus_tag="BT_3664"
                     /old_locus_tag="BT3664"
                     /codon_start=1
                     /transl_table=11
                     /product="GH97"
                     /protein_id="AAO78769.1"
                     /translation="MKHSFNCLSYELLLYVLICIPFCSCSQKDTGVISPNGKICLSVEI
                     KEDTEKDGFGKVFFNVEYKDGKTSRRVLSDTRIGLETQLMSFTDNIRLKSVSGTKLIED
                     DYVMLTGKRSHCQNRGNERIFRFENEKAETLDIVFRAYDDGIVFRYSLPSVQDKDSLTS
                     EHTAYYIPEGTKRWIQNYSVGYEGFYPLKTRAERGKDNMWGYPLLLEPADSLFVLITEA
                     NILRGHSGSRLYNGNDMNQYQVRMTDDKLALGDSFTSPWRVLMIGSLSDIVESTLVTDV
                     SEPNKISDTSWIMPGSASWVYWAHNHGSKNFKIVKDYIDLAVDMKWPYSLIDAEWNEMS
                     NGGDIEDLITYSLSRNIKPMIWYNSSTAWMGPGPLYRLNSKENRIKEYTWLQKSGVVGV
                     KIDFFPDDYSSNMDYYIDLLEDAAKYKLMVNFHGATIPRGWQRTYPHLMTMEAVYGAEW
                     YNNKPILTDRAAEHNVTLPFTRNVIGSMDYTPGTFSDSQHPHITTCGHELALSVVFESA
                     LQHMPDRPEVYSSLPRKVREFLSGLPTAWDDTKLLCGYPGADIVLARRKGDVWYIGGLN
                     GTNENKTLSFSLVPLQVEGKTMDVFKDGVDDKSFAIEEDIQLSNDKMDMSCLPRGGFVA
                     VIK"
     gene            3409..5052
                     /locus_tag="BT_3665"
                     /old_locus_tag="BT3665"
     CDS             3409..5052
                     /locus_tag="BT_3665"
                     /old_locus_tag="BT3665"
                     /codon_start=1
                     /transl_table=11
                     /product="GH29"
                     /protein_id="AAO78770.1"
                     /translation="MKAKKLLLLSLLFIAETLSAQNYQVPVSEQDEPMMQGKFQPTWES
                     LANYKIPEWFRNVKFGIWAHWGPQCVEGSGDWMARSLYMENSPEYRHHIANYGHPSEFG
                     FKDIIPLWKAEKWDPDKLVAFYKKIGAQYFFALGNHHDNMDLWDSKYQPWNSVNMGPKK
                     DILKGWERAARKHGLYFGVSLHADHAWSWYETSQRHDTQGPKKGIPYDGKLTKADGKGK
                     WWEGYDPQDLYAQNHPLSQDSWDNGTIHRQWAWGNGVCLPTQEYCTNFYNRTLDVINRY
                     NPDLLYFDVTVAPFYPISDAGLKIAAHFYNHNMSMQKGKLNAVMFGKILDANQRKALVW
                     DVERGAPNKIIDEPWQSCSCLGGWHYNTSIYNNNQYKSAADVVKLLVDIVSKNGNLLLS
                     VPLRADGTFDEKEEKILNEFGNWMNINKEAIYQTRPWKIFGEGPIADKDVQLNAQGFNE
                     WAYSKADAKEIRFTQTDKNLYATVLGWPEDGKILIRSLAEGNGLYPTKIGRVELLGYGK
                     VSFTRTDKGLVVDIPAKSLKNIAPVLKIRK"
     gene            5064..5453
                     /locus_tag="BT_3666"
                     /old_locus_tag="BT3666"
     CDS             5064..5453
                     /locus_tag="BT_3666"
                     /old_locus_tag="BT3666"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"
                     /protein_id="AAO78771.1"
                     /translation="MSSIQGYKMKEYSMPTKRYCQTLSLKNNPILIEEYRKIHSEEKAW
                     PEIRAGIRAVGILEMEIYILGSQLFMIIETPLDFDWEIAMDKLSNLPRQAEWEKYVSKF
                     QDCPYLSSSAEKWKLMERMFYLYED"
     gene            complement(5530..6390)
                     /locus_tag="BT_3667"
                     /old_locus_tag="BT3667"
     CDS             complement(5530..6390)
                     /locus_tag="BT_3667"
                     /old_locus_tag="BT3667"
                     /codon_start=1
                     /transl_table=11
                     /product="DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_AraC,DBD-Pfam|HTH_
                     AraC,DBD-SUPERFAMILY|0036286,DBD-SUPERFAMILY|0035607,DBD-SU
                     PERFAMILY|0035607"
                     /protein_id="AAO78772.1"
                     /translation="MASFVDKLHPLVLNIGLAIHNADWNWKNVNSPFTRLYYVTEGTAQ
                     VLISGKTQILKANHMYFIPAFTKHSYICNSYFSHYYLHIYEEHQSDSNLLDNWDFPIEI
                     PAVEIDLALFQRLCTINPHMTLQKSDPTSYDNNYTLMQNLLKNKQRTLSDKIESRGIVY
                     QLLARFLKRAQVKMELKDNRIEEAIHYIRKHINETIDLRVLAENSCLSKDHFIRLFKKE
                     TGDTPLKYINRKKIEKAQLILITDDMSIKNVALNLAFEDYSYFNRLFKKITGITPQEYR
                     TSYHS"
ORIGIN
        1 atggtgatca tacattccaa ggatttggtg aactggacga ttaaaggtca tgtggtttct
       61 gatctgagac agatcagtga agaaatgaac tggacgcgta tgaatcgtta tggccgaggt
      121 atttgggcag gggcaattcg ttattatcag ggaaaattct atgtgtattt cggtacaccg
      181 gatgaaggtt attttatgtc gacagctacc gatcctgcgg gaccgtggga accgttgcac
      241 tgtgtaaaag cagaaaaggg atgggatgac tgttgtcctt tctttgacga tgacgggcaa
      301 ctatattttg taggtaccca ttttgctgat aaatacaaaa cttacctgta ccggatgaca
      361 cctgatggga agaccttgat cgaaaactct aaaatattaa ttaatgaggg gtatggtcgc
      421 gaggcaagta aactttataa aatcaacgga acatattatc attttttcag tgaagttaaa
      481 aatggcggta gatatatcat gatgcaacgt tcttcttcaa ttacaggacc gtatcttgaa
      541 aggaaacaat taagtcatgt acagcgtgaa tataatgagc ctaatcaagg cggacttgtt
      601 gaaggtcctg acaggaagtg gtattttttt acccaccatg gtacgggtga ctgggcaggt
      661 cggattgcta gtctgctacc ggtatattgg gtcgatggtt ggccgattat tggtgaggtt
      721 gggcaggatg gcattggcac aatggtatgg caagcggcca agccttccaa tgagtatccg
      781 gttcggactc cacaatcatc tgatgatttt agcaagtcgg tactttctcc tcaatgggaa
      841 tggaactacc agccccggga cgagatgtgg tcattaacgg aaagaccagg caatttgcgg
      901 ttaaaagctt ttcgtccatt agtcacggat aatttgctga aagcgggaaa taccttgact
      961 cagcgttgtt ttcgtacaaa caaaaatgag gttattgtaa aaatgaacat tgagggcatg
     1021 gttgacggac agaaagccgg actgtgtcat tactctaaga gttatgccat ggtgggggta
     1081 cgccagtccg gcaaagaccg gaatctggaa tttcagacca ataaagagaa aatcacaggt
     1141 cctgcgataa agggaaacaa ggtgtggatt aaatctgtat gggggctgga tggaaaaagc
     1201 caattttcat atagtacaga tggcaggaag tttaccccgt tcggagaggt atatcaactt
     1261 gaatggggat attaccgggg aagccgcatt gggatttact gttttaataa tatagcggat
     1321 gcggggtata tcgatgtgga tgagtttatt tatttatatt aactgtttag tgtatgaaac
     1381 attcctttaa ttgtttaagt tatgaattac tgctttatgt gctcatttgt attccattct
     1441 gttcttgttc tcaaaaagat acaggtgtga tttctcctaa tgggaagata tgtctttctg
     1501 ttgaaataaa ggaagatact gaaaaagacg gttttggcaa agtctttttt aatgtagagt
     1561 acaaagatgg taaaacttcc agaagggttc tatctgatac ccgaattggc ttggaaaccc
     1621 agcttatgtc atttaccgat aacatcaggt tgaaatctgt gtccggtact aaactaattg
     1681 aagatgatta tgtgatgctt accggtaaaa gaagtcattg tcagaataga ggaaatgaaa
     1741 ggatatttcg gtttgagaat gagaaggcag aaaccttaga tatcgttttc agggcttacg
     1801 atgacgggat tgtatttcga tatagcttac catctgttca agataaggat agtctgacat
     1861 ctgaacatac agcttactat attccagaag gaacgaaaag atggatacag aattattctg
     1921 ttggttatga aggtttctat ccattgaaaa ccagagcaga aagaggcaaa gacaatatgt
     1981 ggggctatcc attacttttg gaaccagccg attcattgtt tgtgttgata actgaggcca
     2041 atatacttcg tggacatagt ggttccagat tgtataatgg aaatgatatg aatcaatatc
     2101 aagtgcggat gacagatgat aaattagcct tgggtgattc attcacatcg ccatggagag
     2161 ttcttatgat aggttctttg tctgatattg tagaatctac tttggtaaca gatgtctctg
     2221 aacctaacaa aatttctgat acaagttgga ttatgccggg ctctgcatca tgggtatact
     2281 gggcgcataa tcatggttcc aaaaatttca agattgtaaa agactacatt gacttggctg
     2341 ttgatatgaa gtggccatat agtctgatag atgcggaatg gaatgaaatg tcaaacggtg
     2401 gagatattga agatttgata acctattctc ttagtcgaaa tataaagcct atgatttggt
     2461 ataattcgtc aactgcttgg atggggccgg gtcctcttta ccgcttgaat agtaaggaaa
     2521 acagaataaa ggaatatact tggcttcaaa agtcaggtgt agtaggggtt aagattgatt
     2581 tttttcctga tgattattcg tctaatatgg attattatat tgatttgctg gaagatgcag
     2641 ctaaatataa attaatggtc aattttcatg gagctactat tcctcgtgga tggcaaagga
     2701 cttatcctca tctgatgact atggaagccg tttatggggc agagtggtat aacaataagc
     2761 caatacttac agatcgtgct gctgaacata atgtaacatt gccatttacc agaaatgtca
     2821 ttggctcaat ggattataca cctggtacat tctctgattc ccaacatcct catatcacta
     2881 cttgtgggca tgaactagct ttgtctgttg tgtttgagtc agcattgcag catatgcctg
     2941 ataggccgga ggtgtacagt tcattacctc gaaaagtaag agaattcctt tcgggattac
     3001 ctactgcttg ggatgataca aaactgttgt gtggctatcc gggtgctgac atcgtactgg
     3061 cacgacgtaa gggagatgta tggtatattg gaggattgaa cggaactaac gagaataaaa
     3121 ctctttcttt ttcattggtt cctctgcaag ttgaaggaaa aacgatggat gtatttaagg
     3181 atggggtgga cgataagagt tttgccatcg aagaagacat ccagttatca aacgataaaa
     3241 tggatatgtc atgtcttcct cgtggaggat ttgtggcagt aataaagtaa ggataataaa
     3301 tgatattgtt ttaaaagtcg atattgtttt attgtaaatc gtattcatcc tatttttttt
     3361 cactaaaaaa gcgctacgtt tgcattatat aattcaatcg taatatttat gaaagcaaaa
     3421 aaattactat tactatcctt gttatttata gcggagactt tatctgctca aaactatcag
     3481 gttcctgttt cggagcaaga tgaacctatg atgcaaggga aattccagcc tacttgggaa
     3541 tcattggcta attataaaat accggaatgg tttagaaatg taaagtttgg catttgggct
     3601 cattggggcc cccaatgtgt ggaaggatct ggcgattgga tggctcgttc tttgtatatg
     3661 gaaaattcgc ctgaatatcg acatcatata gcgaactacg gtcatccttc tgaatttggc
     3721 tttaaagata ttattccgtt atggaaggct gaaaaatggg accccgataa gttggttgca
     3781 ttttataaaa aaataggtgc tcagtatttt tttgctttgg gtaaccatca tgataatatg
     3841 gacctttggg atagtaagta tcaaccatgg aactcggtta atatggggcc taaaaaagat
     3901 atattgaaag gatgggaaag agcagcgcgt aaacatggac tttattttgg ggtcagtctg
     3961 catgcagacc atgcctggag ttggtatgag acttcccaaa gacacgatac tcaaggtcct
     4021 aaaaaaggta ttccgtatga tgggaaatta acgaaagctg atggaaaagg aaagtggtgg
     4081 gaaggatatg atcctcagga cttgtatgct cagaatcatc cgttaagtca ggatagttgg
     4141 gataatggta caattcatag gcaatgggca tggggaaatg gagtttgttt accaacacag
     4201 gaatattgca ctaatttcta taatcgtaca cttgatgtaa taaaccgtta taatccggat
     4261 ttgttgtatt ttgatgtaac tgttgcacct ttttatccta taagtgatgc aggcttaaaa
     4321 attgcggctc atttttataa tcataatatg tcaatgcaaa agggtaaatt gaatgccgta
     4381 atgtttggta agattcttga tgcaaatcaa cgtaaagctt tggtatggga cgtagaacgt
     4441 ggagctccta ataaaataat agatgaacct tggcagtcat gttcgtgcct tggcgggtgg
     4501 cattataata cgtctattta taataataat caatataagt cggcagctga cgtagtgaag
     4561 ctgttagttg atattgtcag taaaaatggt aacttacttc tgagtgtccc gttgcgtgca
     4621 gatggtacat ttgatgaaaa agaagaaaag atattgaatg aatttggtaa ttggatgaat
     4681 atcaataagg aagcaatcta tcaaacgcgt ccatggaaaa tatttggtga gggacctata
     4741 gcggataaag atgttcaact caacgcccag gggtttaacg aatgggccta tagtaaagct
     4801 gatgcaaagg aaatacgttt tacacaaaca gataaaaatt tgtatgctac agttttagga
     4861 tggcctgaag atgggaaaat cttaattagg tctttagcgg aaggtaacgg gttatatccc
     4921 actaaaatag gcagagtaga gttgcttggt tacggaaaag tatcttttac acgtactgat
     4981 aagggacttg ttgttgatat acccgctaaa tcgttgaaga atatagcccc tgtcttgaaa
     5041 attagaaaat aaaagttatt actatgtcgt ctattcaggg atacaaaatg aaagagtata
     5101 gcatgcctac aaagaggtat tgccaaactt taagccttaa aaataatccg attctgattg
     5161 aagagtatcg taagatacat agtgaagaaa aggcatggcc ggaaataagg gcggggatac
     5221 gtgcagtagg gattctggaa atggaaattt atatattggg atcacaactt tttatgatta
     5281 tagaaactcc actggacttt gattgggaga tagctatgga taaactgtct aatcttccgc
     5341 ggcaggctga gtgggaaaag tatgtgtcta aatttcaaga ctgtccgtat ttgagttctt
     5401 ctgctgaaaa atggaagttg atggaacgta tgttttatct gtatgaagat tagttgagga
     5461 taacgtaatc gtttactacg tgttgagaaa aaaggaatag tgtgaaagtt gctattcctt
     5521 tttttctgct taagagtgat aagaggtgcg atattcttgg ggagtaatac ctgtgatttt
     5581 tttgaataac ctgttgaagt atgaataatc ttcaaaagca agatttaatg caacattttt
     5641 gattgacata tcatcggtta ttagtatgag ttgagctttt tctattttct tacggttaat
     5701 gtattttaag ggggtatctc ctgtctcttt tttgaataga cgaataaaat ggtcttttga
     5761 taaacaggaa ttctcagcga gtactcttaa atcaatagtt tcatttatat gtttacggat
     5821 atagtgaatg gcttcttcta tccgattgtc ttttaattcc atttttactt gagctctttt
     5881 taggaaacgt gctagcaatt gatatacaat acctcttgat tctatcttat cagacaaggt
     5941 ccgttgtttg ttttttagca gattctgcat aagggtgtaa ttgttatcgt aagaagtcgg
     6001 gtctgatttc tgtaaggtca tatgtggatt tatagtgcag agccgctgaa ataatgccaa
     6061 atctatttcg acagcgggga tttctattgg aaaatcccaa ttgtccagta agttgctgtc
     6121 tgactggtgt tcttcatata tatgcagata atagtgggaa aaataagagt tgcagatata
     6181 gctatgtttg gtaaaagctg gaataaaata catgtggtta gcttttagaa tctgagtttt
     6241 acccgatatt aagacttgtg cagtaccttc tgtcacataa tataaacgtg taaaagggct
     6301 attgacattt ttccagttcc aatcggcatt atgaatagcc aaacctatgt tcaaaacaag
     6361 cgggtgcaat ttatcaacaa atgaagccat
//
