| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 27588.m000054 |
| Family | GH104 |
| Protein Properties | Length: 278 Molecular Weight: 29695.2 Isoelectric Point: 6.0329 |
| Chromosome | Chromosome/Scaffold: 27588 Start: 1381 End: 2477 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH104 | 130 | 273 | 1.9e-30 |
| TNGQAFLKAIAEAEGGGYDFKYGAVKGKRNDPWRFTDFSTHPGHGCDGVTTAAGMYQINKATWQYHGEGRMGRTDFTPETQDLIAVSILRDLGIIDKIEE GDIESGLSAASHSWAALPVGRGSAGRHNQPHVTFEHFEAAYRAA | |||
| Full Sequence |
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| Protein Sequence Length: 278 Download |
| MTTTGGKVIS ASSHGSINGV AIALEGDVIF CPACKLEGKI VCAGARIPET WNGKNVALEN 60 DLCACGCTSH PRLVPNQSVK YQITGEADAD MPQATAPATN TVMTFDDKYV LIDEETGIPL 120 AKTEYALRRT NGQAFLKAIA EAEGGGYDFK YGAVKGKRND PWRFTDFSTH PGHGCDGVTT 180 AAGMYQINKA TWQYHGEGRM GRTDFTPETQ DLIAVSILRD LGIIDKIEEG DIESGLSAAS 240 HSWAALPVGR GSAGRHNQPH VTFEHFEAAY RAAGGTTR 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4104 | COG4104 | 0.0002 | 1 | 68 | 71 | + Uncharacterized conserved protein [Function unknown] | ||
| COG4678 | COG4678 | 1.0e-8 | 134 | 278 | 155 | + Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism] | ||
| cd00736 | bacteriophage_lambda_lysozyme | 2.0e-14 | 134 | 275 | 156 | + The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally. | ||
| pfam05488 | PAAR_motif | 2.0e-14 | 1 | 68 | 68 | + PAAR motif. This motif is found usually in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002535578.1 | 0 | 1 | 278 | 1 | 278 | Lysozyme, putative [Ricinus communis] |
| RefSeq | YP_001349241.1 | 2e-16 | 2 | 97 | 12 | 111 | Rhs element Vgr protein [Pseudomonas aeruginosa PA7] |
| RefSeq | YP_107179.1 | 1e-18 | 2 | 135 | 12 | 148 | hypothetical protein BPSL0554 [Burkholderia pseudomallei K96243] |
| RefSeq | YP_727657.1 | 5e-17 | 5 | 127 | 16 | 147 | hypothetical protein H16_A3214 [Ralstonia eutropha H16] |
| RefSeq | ZP_06225910.1 | 1e-28 | 108 | 278 | 30 | 187 | hypothetical protein BC1002DRAFT_2486 [Burkholderia sp. CCGE1002] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1am7_C | 0.00000000003 | 133 | 278 | 9 | 154 | A Chain A, Lysozyme From Bacteriophage Lambda |
| PDB | 1am7_B | 0.00000000003 | 133 | 278 | 9 | 154 | A Chain A, Lysozyme From Bacteriophage Lambda |
| PDB | 1am7_A | 0.00000000003 | 133 | 278 | 9 | 154 | A Chain A, Lysozyme From Bacteriophage Lambda |
| PDB | 3d3d_B | 0.00000000003 | 133 | 278 | 9 | 154 | A Chain A, Lysozyme From Bacteriophage Lambda |
| PDB | 3d3d_A | 0.00000000003 | 133 | 278 | 9 | 154 | A Chain A, Lysozyme From Bacteriophage Lambda |
| Hydropathy |
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| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_149082g0010 | MA_1010840g0060 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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