| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 28368.m000019 |
| Family | GH55 |
| Protein Properties | Length: 341 Molecular Weight: 36763.5 Isoelectric Point: 7.9535 |
| Chromosome | Chromosome/Scaffold: 28368 Start: 1214 End: 2238 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH55 | 24 | 339 | 0 |
| PFSTEQGKAVRDANSSTFYSVLSNVDFEVGDGNPAASGVRMHTAQHSSLSHIDFRMGSGLAGVYQVGNIAYKLRFFGGRYGILAEKTSPAWQFTLVDSLF DGQRDAAIREHEAGLTLANTDIRNTPVGIEIDRGYGDWLWGHDLRFENVSKAGVIVSNENNVYTQVGFERVSARNVPVFAQFRDSGKRLAAPGTGYLVTE FQHGLMLAGLGEPGRFDTRYRTAALPVHDSVRGAAAVPPVMRPLPPVAEWASARGFGAKGDGVSDDTAALQKAIDSRRVVYLPLGLYVVNDTLRLKPDTV LIGLHPGQTRLVLPNG | |||
| Full Sequence |
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| Protein Sequence Length: 341 Download |
| MVIFTGTDTY NVGKVAMPVP SAVPFSTEQG KAVRDANSST FYSVLSNVDF EVGDGNPAAS 60 GVRMHTAQHS SLSHIDFRMG SGLAGVYQVG NIAYKLRFFG GRYGILAEKT SPAWQFTLVD 120 SLFDGQRDAA IREHEAGLTL ANTDIRNTPV GIEIDRGYGD WLWGHDLRFE NVSKAGVIVS 180 NENNVYTQVG FERVSARNVP VFAQFRDSGK RLAAPGTGYL VTEFQHGLML AGLGEPGRFD 240 TRYRTAALPV HDSVRGAAAV PPVMRPLPPV AEWASARGFG AKGDGVSDDT AALQKAIDSR 300 RVVYLPLGLY VVNDTLRLKP DTVLIGLHPG QTRLVLPNGS P |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5434 | PGU1 | 0.004 | 274 | 324 | 56 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| pfam12708 | Pectate_lyase_3 | 1.0e-11 | 273 | 326 | 59 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002535740.1 | 0 | 1 | 341 | 1 | 341 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | YP_001683697.1 | 0 | 1 | 338 | 115 | 443 | SMP-30/gluconolaconase/LRE domain-containing protein [Caulobacter sp. K31] |
| RefSeq | ZP_06120991.1 | 0 | 1 | 341 | 113 | 443 | SMP-30/Gluconolaconase/LRE domain protein [Caulobacter segnis ATCC 21756] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3eqo_B | 0.0000003 | 30 | 326 | 144 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
| PDB | 3eqo_B | 0.0005 | 213 | 326 | 20 | 116 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
| PDB | 3eqo_A | 0.0000003 | 30 | 326 | 144 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
| PDB | 3eqo_A | 0.0005 | 213 | 326 | 20 | 116 | A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue |
| PDB | 3eqn_B | 0.0000003 | 30 | 326 | 144 | 456 | A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete Chrysosporium (Lam55a) |
| Hydropathy |
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