| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29791.m000533 |
| Family | CBM13 |
| Protein Properties | Length: 571 Molecular Weight: 63995.6 Isoelectric Point: 8.0278 |
| Chromosome | Chromosome/Scaffold: 29791 Start: 88195 End: 89910 |
| Description | |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM13 | 462 | 570 | 3.1e-21 |
| CLEANGNDVWLDKCASNKTEQKWALYRDGSVRPEHNRDSCLTNDPKKGIIVEIQSCSPASSGQLWAFRNDGTIWNLHQQKVLDVAYADPDIKRIVIWKYK GQANQKWAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 571 Download |
| MKGNTLAWLL YVVAIWLWFG STSLAGPVAY TSLQDYPTVR FTTGYATAGS YRLFITSLRN 60 RLATGQDVRH GIPVLRDRVG LPIVQRFVLV ELSNWLQEPV ILALDVTTAN VVGFRAGKNA 120 YFFHPDNPDD AQAITHLFKD TTQRQTFNFS GNYSALENQA HEERDKIDLG IQPLEEAISS 180 IYLYSLGQAP LRALASDLIV CIQMVSEAAR FGYIEERIGQ SITSSTPFRP RGRILSYERS 240 WEELSSAIQQ SLQQVFKRVR LQDESYRVFY VDNVRDVLIY TSLALMKFRC QSPRQSSSGF 300 SLVIKPVVPN FADGLVCEEP EPTVRISGRD GLCVDVRFGS YANGNAIQLW PCKSNSDVNQ 360 LWTLKRDGTI RSNGKCLTSN GHAPGDRMMI YDCPSAVTNA TSWQIWENGT IMSKSGLVLA 420 APGGSFTTLT VENNTYAASQ SWLPSNNTEP IVTSILGLRY YCLEANGNDV WLDKCASNKT 480 EQKWALYRDG SVRPEHNRDS CLTNDPKKGI IVEIQSCSPA SSGQLWAFRN DGTIWNLHQQ 540 KVLDVAYADP DIKRIVIWKY KGQANQKWAL L |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00652 | Ricin_B_lectin | 1.0e-18 | 461 | 568 | 114 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 1.0e-22 | 461 | 568 | 113 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 5.0e-23 | 322 | 442 | 126 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 1.0e-23 | 323 | 443 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 5.0e-65 | 41 | 251 | 211 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 35 | 571 | 22 | 569 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 35 | 571 | 22 | 569 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3rtj_B | 0 | 316 | 571 | 3 | 261 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3rti_B | 0 | 316 | 571 | 3 | 261 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2aai_B | 0 | 316 | 571 | 3 | 261 | B Chain B, Crystallographic Refinement Of Ricin To 2.5 Angstroms |
