y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30169.m006622 |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 49467.2 Isoelectric Point: 6.732 |
Chromosome | Chromosome/Scaffold: 30169 Start: 2098463 End: 2100420 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 270 | 406 | 1.3e-28 |
DAGIALGSEMSGGIENVRVEDITAFTSQSAVRIKTAPGRGGYVKDIFVRRMTLQTMKYVFWISGNYKTHPDDGFDPNALAEIKNINYRDIVARNVNMSGA FDGFPTNHFTGICMSNVTIQLSQTPKKPQWNCSNVEG | |||
GH28 | 88 | 250 | 6.9e-38 |
ADDGGAELIVPAGKWLTGSFNLTSHFTLFLHRGATILASQNEADFPIIAALPSFGVEKDFPDGRFSSLIRGINLTDVVITGNNGTIDGQGAPWWDKFEKG LFKASRPLLIDIMYTDQLQISNITLVNSPSWHVHPVYCSNVLVQGVTIIAPVEVPNTDGINPS |
Full Sequence |
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Protein Sequence Length: 452 Download |
MLAFLESGRY HYLEIFTALV FVGSISVGIA ESRNVQIFNK DSYNAVNYAA INCRKHTAFL 60 TDFGGVGDGK TLNTKAFQAA IANLSQYADD GGAELIVPAG KWLTGSFNLT SHFTLFLHRG 120 ATILASQNEA DFPIIAALPS FGVEKDFPDG RFSSLIRGIN LTDVVITGNN GTIDGQGAPW 180 WDKFEKGLFK ASRPLLIDIM YTDQLQISNI TLVNSPSWHV HPVYCSNVLV QGVTIIAPVE 240 VPNTDGINPS RFLASSFHQY LNFPLISTSD AGIALGSEMS GGIENVRVED ITAFTSQSAV 300 RIKTAPGRGG YVKDIFVRRM TLQTMKYVFW ISGNYKTHPD DGFDPNALAE IKNINYRDIV 360 ARNVNMSGAF DGFPTNHFTG ICMSNVTIQL SQTPKKPQWN CSNVEGVSSH VTPTPCSLFP 420 EKPVDCTFPE DKLPIESIHL KTCTAKRVFP GV 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-15 | 63 | 409 | 374 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-18 | 57 | 359 | 347 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-18 | 60 | 413 | 391 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-22 | 156 | 404 | 280 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-39 | 60 | 412 | 420 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8e-24 | 60 | 389 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8e-24 | 60 | 389 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8e-24 | 60 | 389 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8e-24 | 60 | 389 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000003 | 74 | 325 | 26 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Sequence Alignments (This image is cropped. Click for full image.) |
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