CAZyme Information

Basic Information
SpeciesRicinus communis
Cazyme ID32250.m000015
FamilyGH43
Protein PropertiesLength: 495 Molecular Weight: 54205 Isoelectric Point: 6.7443
ChromosomeChromosome/Scaffold: 32250 Start: 45 End: 1529
Description
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH43573500
  VNPILSGYYPDPSITRVGDDYYLVNSSFTNFPGLPVFRSRDLVNWTQVGNALDRPGQVDFTGVRASQGIYAPDISYHDGTYYIVTTCSSCPGGTGNFVIT
  AKDPAGPWSQPVTIRGLQGIDPSLVWEDDKLYVVYNNAPEGQPRYEGHRAIWMAELDPRTLQFAGKPKVIVDGGVVPANRPIWIEGPHIFRKDGHYYLIC
  AEGGTADNHSEVVFRADAVTGPYVPGPVNPILTQRDLDPKRAHPVTTAGHADFVQTQNGQWWAVFLATRPYPGNFYNIGRETFMLPVDWKDGWP
Full Sequence
Protein Sequence     Length: 495     Download
MKNHSVRSMV LWGVFALGAA SSMAAADGRS TTVARFERFS YQGQAQETVR PRDGEFVNPI    60
LSGYYPDPSI TRVGDDYYLV NSSFTNFPGL PVFRSRDLVN WTQVGNALDR PGQVDFTGVR    120
ASQGIYAPDI SYHDGTYYIV TTCSSCPGGT GNFVITAKDP AGPWSQPVTI RGLQGIDPSL    180
VWEDDKLYVV YNNAPEGQPR YEGHRAIWMA ELDPRTLQFA GKPKVIVDGG VVPANRPIWI    240
EGPHIFRKDG HYYLICAEGG TADNHSEVVF RADAVTGPYV PGPVNPILTQ RDLDPKRAHP    300
VTTAGHADFV QTQNGQWWAV FLATRPYPGN FYNIGRETFM LPVDWKDGWP LILEQAKTVP    360
YAVTKPALPA QPPAPLATSG NFAYVDEFDG PLSSAWIGIR IPRTPLYTVE RGDLVLRSGA    420
PLGDLRGVPG FVGRRQQHHV ATASTVVDFV PQRDGDRAGL VAMQNDDNHV FLGVTRSGGK    480
NVVALYKTEG GKETL 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd08989GH43_XYL6.0e-6658346290+
cd09001GH43_XYL_23.0e-6856352303+
pfam04616Glyco_hydro_432.0e-9656350299+
COG3507XynB5.0e-10553483445+
cd09000GH43_XYL_14.0e-16158352298+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
RefSeqXP_002536919.1014951495beta-xylosidase, putative [Ricinus communis]
RefSeqYP_002131318.103449320473xylosidase/arabinosidase [Phenylobacterium zucineum HLK1]
RefSeqYP_003061161.1014951499Xylan 1,4-beta-xylosidase [Hirschia baltica ATCC 49814]
RefSeqZP_01301602.1074954483xylosidase/arabinosidase [Sphingomonas sp. SKA58]
RefSeqZP_04768707.10164896481glycoside hydrolase family 43 [Asticcacaulis excentricus CB 48]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1yrz_B0584917434A Chain A, Crystal Structure Of Xylan Beta-1,4-Xylosidase From Bacillus Halodurans C-125
PDB1yrz_A0584917434A Chain A, Crystal Structure Of Xylan Beta-1,4-Xylosidase From Bacillus Halodurans C-125
PDB2exh_D0584756424A Chain A, Structure Of The Family43 Beta-Xylosidase From Geobacillus Stearothermophilus
PDB2exh_C0584756424A Chain A, Structure Of The Family43 Beta-Xylosidase From Geobacillus Stearothermophilus
PDB2exh_B0584756424A Chain A, Structure Of The Family43 Beta-Xylosidase From Geobacillus Stearothermophilus
Signal Peptide
Cleavage Site
24
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DY271994303563490
FC903633279483230
GT035053247522915e-34
GT035053483053505e-34
HO446877461424782e-28
Orthologous Group
SpeciesID
Ricinus communis35285.m00001632604.m000021
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny