| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 60637.m00004 |
| Family | CBM13 |
| Protein Properties | Length: 575 Molecular Weight: 63832.5 Isoelectric Point: 6.8256 |
| Chromosome | Chromosome/Scaffold: 60637 Start: 6953 End: 8746 |
| Description | |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 325 | 450 | 2.9e-22 |
| RIVGRNGLCVDVTGEEFFDGNPIQLWPCKSNTDWNQLWTLRKDSTIRSNGKCLTISKSSPGQQVVIYNCSTATVGATRWQIWDNRTIINPTSGLVLAATS GNSGTKLTVQTNIYAVSQGWLPTNNT | |||
| CBM13 | 461 | 571 | 6.2e-23 |
| YGMCLQANSGKVWLEDCTSEKAEQQWALYADGSIRPQQNRDNCLTTDANIKGTVVKILSCGPASSGQRWMFKNDGTILNLYNGLVLDVRRSDPSLKQIIV HPVHGNLNQIW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 575 Download |
| MKPGGNTIVI WMYAVATWLC FGSTSGWSFT LEDNNIFPKQ YPIINFTTAD ATVESYTNFI 60 RAVRSHLTTG GDVRHEIPVL PNRVGLPISQ RFILVELSNH AELSVTLALD VTNAYVVGCR 120 AGNSAYFFHP DNQEDAEAIT HLFTDVQNSF TFAFGGNYDR LEQLGGLREN IELGTGPLED 180 AISALYYYST CGTQIPTLAR SFMVCIQMIS EAARFQYIEG EMRTRIRYNR RSAPDPSVIT 240 LENSWGRLST AIQESNQGAF ASPIQLQRRN GSKFNVYDVS ILIPIIALMV YRCAPPPSSQ 300 FSLLIRPVVP NFNADVCMDP EPIVRIVGRN GLCVDVTGEE FFDGNPIQLW PCKSNTDWNQ 360 LWTLRKDSTI RSNGKCLTIS KSSPGQQVVI YNCSTATVGA TRWQIWDNRT IINPTSGLVL 420 AATSGNSGTK LTVQTNIYAV SQGWLPTNNT QPFVTTIVGL YGMCLQANSG KVWLEDCTSE 480 KAEQQWALYA DGSIRPQQNR DNCLTTDANI KGTVVKILSC GPASSGQRWM FKNDGTILNL 540 YNGLVLDVRR SDPSLKQIIV HPVHGNLNQI WLPLF |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 3.0e-7 | 492 | 571 | 81 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 4.0e-26 | 323 | 445 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 1.0e-27 | 322 | 444 | 126 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 7.0e-28 | 456 | 572 | 121 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 6.0e-74 | 45 | 255 | 213 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzo_C | 0 | 36 | 297 | 1 | 262 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 1rzo_A | 0 | 36 | 297 | 1 | 262 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 1rzo_D | 0 | 314 | 575 | 1 | 262 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 1rzo_B | 0 | 314 | 575 | 1 | 262 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
| PDB | 4hv3_A | 0 | 36 | 301 | 2 | 268 | B Chain B, Agglutinin From Ricinus Communis With Galactoaza |
