| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 60637.m00006 |
| Family | CBM13 |
| Protein Properties | Length: 583 Molecular Weight: 65062.7 Isoelectric Point: 6.2637 |
| Chromosome | Chromosome/Scaffold: 60637 Start: 13981 End: 15732 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 335 | 458 | 1.1e-21 |
| MGRNGLCADVRDGDYRDGNSIQLWPCKSSTDVNQLWTLKKDGTIRSNGKCLTTCGYNPGHHVMIYDCDTAIIDATRWQIWDNRTIINPISGLVLAATSGN SGTTLTVRTNIYATSQGWLPTNNN | |||
| CBM13 | 470 | 579 | 1.8e-24 |
| DLCLQANSGNVWLEECVNKKAEQQWALFADGSIRPQQDQNNCLTGDASTQGTIVKVLSCNSGSAGQRWMLKNDGTIWNLYYGLVLDVANSDPSLKQIIIW SFNGDPNQKW | |||
| Full Sequence |
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| Protein Sequence Length: 583 Download |
| MKLRGNTIVI WLYAVASWLW FGSTSGWSFT LQDSNNNKLL KQYPTIIFTT VSATAESYRD 60 FINAMRSQLL AGDDVRHEIP VLQNRVGLLI NQRFVLVQVT NQAELSITLA VDVTNVYVVG 120 YRAGNNAYFF QPDNPEDAEA ITHLFTDSQS RQTFSFGGNY DRLEQIASQG GRRGRREDIE 180 LGIGPMEEAI SALYRYTTGG VQLPTLARSF IVCIQMISEA IRFQYIEGEM RTRIRHSRGS 240 APDPSVITLE NNWGRLSTTI QESNQGAFAN PIQLQRRNGS MFYIFDVSKL IPIIALMVYR 300 CAPPAALQHP LLAKPMVSNS NDDVCVDPEP TMRIMGRNGL CADVRDGDYR DGNSIQLWPC 360 KSSTDVNQLW TLKKDGTIRS NGKCLTTCGY NPGHHVMIYD CDTAIIDATR WQIWDNRTII 420 NPISGLVLAA TSGNSGTTLT VRTNIYATSQ GWLPTNNNEP FVTSIVGLYD LCLQANSGNV 480 WLEECVNKKA EQQWALFADG SIRPQQDQNN CLTGDASTQG TIVKVLSCNS GSAGQRWMLK 540 NDGTIWNLYY GLVLDVANSD PSLKQIIIWS FNGDPNQKWL PLL |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 2.0e-6 | 424 | 539 | 123 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 4.0e-7 | 500 | 579 | 81 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 1.0e-23 | 331 | 453 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 4.0e-27 | 465 | 580 | 120 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 4.0e-70 | 47 | 263 | 218 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA26230.1 | 0 | 12 | 583 | 1 | 565 | unnamed protein product [Ricinus communis] |
| RefSeq | XP_002532189.1 | 0 | 35 | 583 | 32 | 574 | ricin-agglutinin family protein [Ricinus communis] |
| RefSeq | XP_002533608.1 | 0 | 35 | 583 | 32 | 574 | ricin-agglutinin family protein [Ricinus communis] |
| RefSeq | XP_002534221.1 | 0 | 1 | 583 | 1 | 583 | ricin-agglutinin family protein [Ricinus communis] |
| RefSeq | XP_002534649.1 | 0 | 1 | 583 | 1 | 576 | Ricin precursor [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 43 | 583 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 43 | 583 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 1j1m_A | 0 | 41 | 308 | 5 | 267 | A Chain A, Ricin A-Chain (Recombinant) At 100k |
| PDB | 4hv7_X | 0 | 41 | 308 | 4 | 266 | A Chain A, Ricin A-Chain (Recombinant) At 100k |
| PDB | 4hup_X | 0 | 41 | 308 | 4 | 266 | A Chain A, Ricin A-Chain (Recombinant) At 100k |
| Transmembrane Domains | ||||
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| Start | End | |||
| 7 | 29 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV523936 | 296 | 1 | 296 | 0 |
| EV523856 | 282 | 1 | 282 | 0 |
| EV523792 | 280 | 1 | 280 | 0 |
| EV523326 | 280 | 1 | 280 | 0 |
| EV523718 | 279 | 1 | 279 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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