| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 60638.m00018 |
| Family | CBM13 |
| Protein Properties | Length: 575 Molecular Weight: 64371.9 Isoelectric Point: 7.632 |
| Chromosome | Chromosome/Scaffold: 60638 Start: 104931 End: 106736 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM13 | 326 | 448 | 1.9e-22 |
| IAGRNGLCVDVRGEEFYDGNPIQLWPCKSNTDWNQLWTLRKDGTIRSNGKCLTIYKSSPGKHVMIYNCTTATVGATRWQIWDNRTIINPISGLVLAATSG NSGTTLTVQTNIYAVSQGWLPSN | |||
| CBM13 | 459 | 571 | 1.5e-22 |
| GLNDLCLQANTGKVWLDECTSEKAEQQWALYADGSIRPQQNQDNCLTSDANIRETIVKTLSCSTASSGQRWMFKNDGTIWNLYNGLVLDVKRSDPTLKQI IIYPFHGNPNQIW | |||
| Full Sequence |
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| Protein Sequence Length: 575 Download |
| MKLGGNTIVI WIYAVATWLW FGSTSGWSFT LGDNNIFLKQ YPIINFTTAG ATAQSYTNFI 60 DAVRSHLTTG DDVRHEIPVL RNRVGLPINQ RFVLVQLSNQ AEHSVTLAMD VTNAYVVGYR 120 AGNNAYFFRP DSPEDAEAIT HLFTDAQNPY TFAFGGNYDR LEQLGGLREN IELGNGPLED 180 AISALYYYST GRIQLPTVAR SFIVCIQMIS EAVRFQYIEG EIRTRIRHNR RSAPDPSVIT 240 LENSWGRLST AIQESNQGAF ASPIQLQRRN GSKFNVYDVS KLIPIIALMV YRCARPPSTQ 300 FSLLIRPVVP SLNDDVCVDP EPIVRIAGRN GLCVDVRGEE FYDGNPIQLW PCKSNTDWNQ 360 LWTLRKDGTI RSNGKCLTIY KSSPGKHVMI YNCTTATVGA TRWQIWDNRT IINPISGLVL 420 AATSGNSGTT LTVQTNIYAV SQGWLPSNNT QPFVTSIVGL NDLCLQANTG KVWLDECTSE 480 KAEQQWALYA DGSIRPQQNQ DNCLTSDANI RETIVKTLSC STASSGQRWM FKNDGTIWNL 540 YNGLVLDVKR SDPTLKQIII YPFHGNPNQI WFPLF |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00652 | Ricin_B_lectin | 2.0e-23 | 452 | 571 | 125 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 9.0e-26 | 323 | 445 | 126 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00652 | Ricin_B_lectin | 2.0e-26 | 322 | 444 | 126 | + Ricin-type beta-trefoil lectin domain. | ||
| cd00161 | RICIN | 2.0e-26 | 457 | 571 | 119 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 2.0e-74 | 45 | 255 | 213 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA26230.1 | 0 | 12 | 575 | 1 | 565 | unnamed protein product [Ricinus communis] |
| Swiss-Prot | P06750 | 0 | 12 | 575 | 1 | 564 | AGGL_RICCO RecName: Full=Agglutinin; AltName: Full=RCA; Contains: RecName: Full=Agglutinin A chain; AltName: Full=rRNA N-glycosidase; Contains: RecName: Full=Agglutinin B chain; Flags: Precursor |
| RefSeq | XP_002532193.1 | 0 | 29 | 575 | 29 | 575 | ricin-agglutinin family protein [Ricinus communis] |
| RefSeq | XP_002534220.1 | 0 | 1 | 575 | 1 | 575 | Agglutinin precursor [Ricinus communis] |
| RefSeq | XP_002534649.1 | 0 | 1 | 575 | 1 | 576 | Ricin precursor [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 41 | 575 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 41 | 575 | 23 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 4hv3_A | 0 | 36 | 301 | 2 | 268 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3hio_A | 0 | 36 | 301 | 2 | 268 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2r3d_A | 0 | 36 | 301 | 2 | 268 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| Transmembrane Domains | ||||
|---|---|---|---|---|
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| Start | End | |||
| 7 | 29 | |||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EV523936 | 289 | 1 | 288 | 0 |
| EV523842 | 276 | 1 | 276 | 0 |
| EV523856 | 275 | 1 | 274 | 0 |
| EV523326 | 274 | 1 | 273 | 0 |
| EV523803 | 275 | 1 | 275 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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