| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | AC235753_8.1 |
| Family | PL1 |
| Protein Properties | Length: 407 Molecular Weight: 44661.5 Isoelectric Point: 7.925 |
| Chromosome | Chromosome/Scaffold: 2357532 Start: 24915 End: 27580 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 120 | 326 | 0 |
| IQVEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVD HCSLSNCEDGLIDAIYGSTAITISNNYMTHHDKVMLLGHSDSYTHDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFVAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MTNTPFSLVL LFFSFFMPTL ISSSLVQNPE LVVQEVNRKI NASSARRNLG YLSCGSGNPI 60 DDCWRCDSNW EKNRQRLADC AIGFGKNAIG GKNGKIYVVT DASDDNPVTP KPGTLRHAVI 120 QVEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NIIIHGIHIH 180 DCKQGGNAMV RDSPRHFGWR TISDGDGVSI FGGSHVWVDH CSLSNCEDGL IDAIYGSTAI 240 TISNNYMTHH DKVMLLGHSD SYTHDKNMQV TIAFNHFGEG LVQRMPRCRL GYFHVVNNDY 300 THWEMYAIGG SANPTINSQG NRFVAPNNRF SKEVTKYEDA AESEWKHWNW RSEGDLMVNG 360 AFFTKSGGGA SSSYARASSL SARPSSIVGS ITIGAGTLNC KKGSPC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-26 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-72 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-80 | 132 | 327 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32549.1 | 0 | 18 | 406 | 24 | 413 | pectase lyase [Prunus persica] |
| GenBank | ACU21247.1 | 0 | 18 | 406 | 18 | 406 | unknown [Glycine max] |
| GenBank | ADB90475.1 | 0 | 27 | 406 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
| DDBJ | BAE48664.1 | 0 | 18 | 406 | 24 | 413 | Pectate lyase [Prunus mume] |
| RefSeq | XP_002322215.1 | 0 | 18 | 406 | 17 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 367 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 367 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-19 | 77 | 324 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.00000000000001 | 148 | 300 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.00000000000003 | 148 | 300 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
