| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra003353 |
| Family | GH35 |
| Protein Properties | Length: 227 Molecular Weight: 25636.7 Isoelectric Point: 7.0271 |
| Chromosome | Chromosome/Scaffold: 07 Start: 12761126 End: 12762399 |
| Description | beta-galactosidase 15 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 29 | 217 | 0 |
| TIDGHRRVLLSGSIHYPRSTPEMWPDLIKKSKEGGLDAIETYVFWNAHEPTRRQYDFSGKLDLIRFLKTIQDEGLYGVLRIGPYACAEWNYGGFPVWLHN MPGMVFRTTNKSFMDEMQNFTTMIVDMVKKEKLFASQGGPIILAQIENEYGNVMGPYGESGKAYIKWCANMAQSLDVGVPWIMCQQNDA | |||
| Full Sequence |
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| Protein Sequence Length: 227 Download |
| MVSLRFLLCF LFVSSVYATI VSHDGRAITI DGHRRVLLSG SIHYPRSTPE MWPDLIKKSK 60 EGGLDAIETY VFWNAHEPTR RQYDFSGKLD LIRFLKTIQD EGLYGVLRIG PYACAEWNYG 120 GFPVWLHNMP GMVFRTTNKS FMDEMQNFTT MIVDMVKKEK LFASQGGPII LAQIENEYGN 180 VMGPYGESGK AYIKWCANMA QSLDVGVPWI MCQQNDAPQP MVISSV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 1.0e-6 | 43 | 204 | 183 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 3.0e-22 | 21 | 180 | 171 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| PLN03059 | PLN03059 | 2.0e-101 | 4 | 222 | 222 | + beta-galactosidase; Provisional | ||
| pfam01301 | Glyco_hydro_35 | 2.0e-104 | 27 | 222 | 200 | + Glycosyl hydrolases family 35. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAJ09953.1 | 0 | 2 | 222 | 2 | 227 | beta-galactosidase [Mangifera indica] |
| RefSeq | NP_683341.1 | 0 | 1 | 222 | 24 | 246 | BGAL15 (beta-galactosidase 15); beta-galactosidase [Arabidopsis thaliana] |
| Swiss-Prot | Q9C6W4 | 0 | 1 | 222 | 1 | 223 | BGL15_ARATH RecName: Full=Beta-galactosidase 15; Short=Lactase 15; Flags: Precursor |
| RefSeq | XP_002516237.1 | 0 | 1 | 222 | 1 | 226 | beta-galactosidase, putative [Ricinus communis] |
| RefSeq | XP_002516256.1 | 0 | 6 | 222 | 35 | 248 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 3e-31 | 30 | 215 | 17 | 196 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 1e-30 | 30 | 208 | 12 | 182 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 1e-30 | 30 | 208 | 12 | 182 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8c_B | 1e-30 | 30 | 208 | 12 | 182 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| PDB | 4e8c_A | 1e-30 | 30 | 208 | 12 | 182 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 18 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GR457807 | 222 | 1 | 222 | 0 |
| EV157431 | 217 | 6 | 222 | 0 |
| EV161077 | 217 | 6 | 222 | 0 |
| FD568609 | 217 | 6 | 222 | 0 |
| DK510959 | 217 | 6 | 222 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Brassica rapa | Bra003128 | Bra021198 | |||
| Linum usitatissimum | Lus10011237 | Lus10036109 | Lus10000271 | ||
| Malus domestica | MDP0000127542.34.225 | MDP0000127542.34.225 | |||
| Panicum virgatum | Pavirv00000761m | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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