| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009083 |
| Family | GH51 |
| Protein Properties | Length: 789 Molecular Weight: 87193.8 Isoelectric Point: 5.0954 |
| Chromosome | Chromosome/Scaffold: 10 Start: 15172284 End: 15178055 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH51 | 499 | 786 | 0 |
| VWFQEALDGIEFARGDANSTWGSVRAAMGHPTPFDLKYVAVGNEDCLQKYTYYKGNYLVFYNAIKKAYPDIKIISNCDGSSQPLDHPADYYDFHAFVSEY AAKSETDANKGNLLAALGEAGFLLGLEKNSDVVGMVSYAPLFVNTNDRRWLPDAIVFNSSHLYGTPSYWVQQFFTESSGATLLSSTMEGNSSYVEASAIS FQSNGSDYIQIKAVNFANVTVELKVKMTGLDSSNTKASAKKKKVLTSASVMDENSFSNPEMITPQESLGVMPEGNLTFVLPPYSFSLF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 789 Download |
| MLEVVSSVAS YLDHRNCSTE VRVGVHHLDD SQQNKNFTFK YHRDGNEIYS INALNFHPHE 60 TVVSEAAAPA SAPHVANSMG SASAAPPVAN MAFASCNSQS KAFQESKSAK DFCVHVSSNF 120 SIFMQMYLAM MDRKWCSLTF LTSICLILFL LGSYAAYEHF RRVDAREDNE KHYVTLQVEA 180 SNATGRPIPE TLFGIFFEEI NHAGAGGLWA ELVSNRGFEA GGQIIPSSIW PWSIIGDEST 240 ISVVTDRSSC FERNKIALRM EVLCNSSGCP SEGVGVYNPG YWGMNIEKGK KYKVTLYVRS 300 TGDIDVSVSL TSSNGSLTLA SEQIIALASE GHGFRNDLFQ MMVDLKPRFI RFPGGCYVEG 360 DSLSNAFHWK ETVGAWEERP GHFGDVWNYW TDDGLGQFEF FQLAEDLGAA PIWVFNSGIS 420 HHDQVETARI MPFVQEALDG IEFARGDANS TWGSVRAAMG HPKPFGLKYV AVGNEDCWQK 480 YTYYKGSDKT KNVISFYFVW FQEALDGIEF ARGDANSTWG SVRAAMGHPT PFDLKYVAVG 540 NEDCLQKYTY YKGNYLVFYN AIKKAYPDIK IISNCDGSSQ PLDHPADYYD FHAFVSEYAA 600 KSETDANKGN LLAALGEAGF LLGLEKNSDV VGMVSYAPLF VNTNDRRWLP DAIVFNSSHL 660 YGTPSYWVQQ FFTESSGATL LSSTMEGNSS YVEASAISFQ SNGSDYIQIK AVNFANVTVE 720 LKVKMTGLDS SNTKASAKKK KVLTSASVMD ENSFSNPEMI TPQESLGVMP EGNLTFVLPP 780 YSFSLFDI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 7.0e-6 | 502 | 542 | 41 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 6.0e-28 | 627 | 782 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| COG3534 | AbfA | 5.0e-30 | 333 | 479 | 149 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| smart00813 | Alpha-L-AF_C | 4.0e-32 | 627 | 782 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 137 | 788 | 5 | 655 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 137 | 788 | 5 | 655 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 137 | 788 | 5 | 655 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 131 | 788 | 3 | 652 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| RefSeq | XP_002523672.1 | 0 | 175 | 788 | 39 | 658 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 2e-17 | 329 | 788 | 44 | 481 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 2e-17 | 329 | 788 | 44 | 481 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 2e-17 | 329 | 788 | 44 | 481 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 2e-17 | 329 | 788 | 44 | 481 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 2e-17 | 329 | 788 | 44 | 481 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
