| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra009400 |
| Family | CE8 |
| Protein Properties | Length: 539 Molecular Weight: 58707.3 Isoelectric Point: 7.4411 |
| Chromosome | Chromosome/Scaffold: 10 Start: 16478899 End: 16480772 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 228 | 530 | 0 |
| DVTVCKNGNCRYQTVQDAVNAAPDNNGVSKFVIKINEGVYEETVTVPFQKKNVVFIGDGIGKTVITGSLNAGMPGITTFDTATVGVLGDGFMARDITFQN TAGPDTHQAVAFRSDSDFSLLENCEFLGNQDTLYVHGLRQFYKKCRIQGNVDFIFGNAASVFQDCEILIAPRQLQPEKGDNNAVTAQGRIDPAQSTGFVF LNCSISGTDEYMKLYKANPKVHKSYLGRPWKDYSRTVFIGCNLEALINSDGWLPWSGDLSLKTLYYGESKNTGPGSDRSKRVPWSSVIPDEHVDMYSVAN FIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 539 Download |
| MSSIIILLFS LFLFTSPSFS SGHHQTPPPL SPSPPPAAQI RLACKATRYP DVCVSSLYKP 60 GRVPSDPNPS QIIHSAVSVS IEKLIIAQSE VKSILDASVG NLNRTNAANK YLQQLSYSLH 120 RTRATYQALT RGKIKDARAW MSAALVSRSP LKYVNGTKEV VETMSSLNEF INVTSNALSM 180 LVSYDNFGDN VSSWTPPATE RDGFWDKTGG PKVGAGPSLG FPSGLKEDVT VCKNGNCRYQ 240 TVQDAVNAAP DNNGVSKFVI KINEGVYEET VTVPFQKKNV VFIGDGIGKT VITGSLNAGM 300 PGITTFDTAT VGVLGDGFMA RDITFQNTAG PDTHQAVAFR SDSDFSLLEN CEFLGNQDTL 360 YVHGLRQFYK KCRIQGNVDF IFGNAASVFQ DCEILIAPRQ LQPEKGDNNA VTAQGRIDPA 420 QSTGFVFLNC SISGTDEYMK LYKANPKVHK SYLGRPWKDY SRTVFIGCNL EALINSDGWL 480 PWSGDLSLKT LYYGESKNTG PGSDRSKRVP WSSVIPDEHV DMYSVANFIQ AEEWAMSG* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 2.0e-103 | 37 | 534 | 539 | + pectinesterase | ||
| PLN02301 | PLN02301 | 6.0e-109 | 118 | 537 | 428 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 2.0e-109 | 229 | 534 | 310 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 6.0e-159 | 228 | 532 | 308 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 37 | 535 | 506 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB09534.1 | 0 | 29 | 535 | 60 | 573 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_196538.1 | 0 | 29 | 535 | 34 | 547 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 38 | 535 | 91 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002275192.1 | 0 | 24 | 534 | 28 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002281640.1 | 0 | 1 | 534 | 1 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 228 | 534 | 8 | 307 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 228 | 537 | 4 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-16 | 239 | 507 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-16 | 239 | 507 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-16 | 239 | 507 | 18 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
