| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036510 |
| Family | CBM43 |
| Protein Properties | Length: 450 Molecular Weight: 49595.2 Isoelectric Point: 6.2697 |
| Chromosome | Chromosome/Scaffold: 09 Start: 1507271 End: 1508946 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 361 | 443 | 7.9e-29 |
| WCVTKSGAETEALQRNIDYVCGLGLDCEPIIEGGPCFLPNTVEAHSAYAMNLFYQTMGRHEFDCDFDKTGEITSIDPSYGDCQ | |||
| GH17 | 18 | 332 | 0 |
| IGVNYGTLANNLPPPRQVAEFLLHSTVINRIRLFNADPQILQAFAHTGVAVTVTISNDQIPHLTNLSFAQRWISDHIQPHFPSTNIIRILVGNEVISTAN HLLIRNLVPAMQSLHTALVSASLHRRIQISTPHSLGILSHTTPPSSARFRQGYDTHVLKPLLSFLRTIASPFVVNPYPFFGYSPETLDFALFRTNPGLFD QDTKLHYTNMFDAQLDSVYSAMERLGFSDVAIVVGEIGWPSKGDKDQIGVDVATAAEFNRKVMDRVNSGTGTPLMPNRTFETYIFALFNENLKPGPVSER NFGLFRSDLIPVYDI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MVAFLIILST GSGADASIGV NYGTLANNLP PPRQVAEFLL HSTVINRIRL FNADPQILQA 60 FAHTGVAVTV TISNDQIPHL TNLSFAQRWI SDHIQPHFPS TNIIRILVGN EVISTANHLL 120 IRNLVPAMQS LHTALVSASL HRRIQISTPH SLGILSHTTP PSSARFRQGY DTHVLKPLLS 180 FLRTIASPFV VNPYPFFGYS PETLDFALFR TNPGLFDQDT KLHYTNMFDA QLDSVYSAME 240 RLGFSDVAIV VGEIGWPSKG DKDQIGVDVA TAAEFNRKVM DRVNSGTGTP LMPNRTFETY 300 IFALFNENLK PGPVSERNFG LFRSDLIPVY DIGILRPTVR ASDPPENNRR SPVGGSSGKR 360 WCVTKSGAET EALQRNIDYV CGLGLDCEPI IEGGPCFLPN TVEAHSAYAM NLFYQTMGRH 420 EFDCDFDKTG EITSIDPSYG DCQYQAEFV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-17 | 360 | 430 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-36 | 361 | 444 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 3.0e-88 | 18 | 332 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23036.1 | 0 | 15 | 444 | 21 | 458 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001031936.1 | 0 | 12 | 446 | 24 | 457 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_001119271.1 | 0 | 12 | 438 | 24 | 449 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002318439.1 | 0 | 13 | 444 | 27 | 463 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526252.1 | 0 | 1 | 438 | 12 | 466 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 18 | 332 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 18 | 332 | 3 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 18 | 332 | 3 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 18 | 332 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 18 | 332 | 3 | 312 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
