| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g12710.1 |
| Family | CBM22 |
| Protein Properties | Length: 754 Molecular Weight: 82588.3 Isoelectric Point: 5.2568 |
| Chromosome | Chromosome/Scaffold: 1 Start: 9594501 End: 9597614 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 17 | 158 | 1.1e-31 |
| NIILNPEFESGLDNWSGSGCKIELHDSLDGGKVLPASGKYFVAATGRTDTWNGVMQDVTSRLQRKTAYEATATVRLSAGAGSGAAVSPCEVRATLAVQTA EGRQQYIGVGKLQASDKDWVQVQGKFLLNSTVAKATIYIEGP | |||
| CBM22 | 193 | 343 | 6.50001e-40 |
| NIIQNSNLDDGLNGWFPLGPCALAVGDGSPRVLPPMAQESLALDDEPLNGKHIHVTNRTQTWMGPAQIITDKLTLHATYQVSAWVRVVAGSGKQTMSTTS PQNVNIAVAVDSQWLNGGQVLARDERWYEIGGSFRVESKPASRVMVYVQGP | |||
| GH10 | 410 | 670 | 0 |
| VSNSFPLGACIMRTNMDNEDFVDFFTKNFNWAVFGNELKWYWTEPQRGQVSYADADDLLKLCADNGMCVRGHCIFWEVDNMVQQWVKTLSTDELSAAVKS RIEGLLTRYKGKFRHYDVNNEMLHGSFYQDKLGKDIRAAMFKSAGELDPDALLFVNDYNVEAMCDIRATPEAYIEQIIGLQEQGAPVGGVGLQGHVSNPV GPVIRSVLDRLAVLGLPLWFTELDVSAANEHVRADDLEVMLREAYAHPAVEGVMLWGFWEL | |||
| Full Sequence |
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| Protein Sequence Length: 754 Download |
| MAIYGNVSDG AGADDSNIIL NPEFESGLDN WSGSGCKIEL HDSLDGGKVL PASGKYFVAA 60 TGRTDTWNGV MQDVTSRLQR KTAYEATATV RLSAGAGSGA AVSPCEVRAT LAVQTAEGRQ 120 QYIGVGKLQA SDKDWVQVQG KFLLNSTVAK ATIYIEGPQA GVDLLLNCLV VKHAQKAPPS 180 PEPDFENLEY GANIIQNSNL DDGLNGWFPL GPCALAVGDG SPRVLPPMAQ ESLALDDEPL 240 NGKHIHVTNR TQTWMGPAQI ITDKLTLHAT YQVSAWVRVV AGSGKQTMST TSPQNVNIAV 300 AVDSQWLNGG QVLARDERWY EIGGSFRVES KPASRVMVYV QGPDPGLDLM VSGFQVFPVD 360 RKARVKHLRK LTDKVRKRDV VVKLTVSGAD GAPVNYATAG DGVEVRVRQV SNSFPLGACI 420 MRTNMDNEDF VDFFTKNFNW AVFGNELKWY WTEPQRGQVS YADADDLLKL CADNGMCVRG 480 HCIFWEVDNM VQQWVKTLST DELSAAVKSR IEGLLTRYKG KFRHYDVNNE MLHGSFYQDK 540 LGKDIRAAMF KSAGELDPDA LLFVNDYNVE AMCDIRATPE AYIEQIIGLQ EQGAPVGGVG 600 LQGHVSNPVG PVIRSVLDRL AVLGLPLWFT ELDVSAANEH VRADDLEVML REAYAHPAVE 660 GVMLWGFWEL FMSRDCSHLV NAEGDVNEAG RRLLQLKKEW LTHAHGRADE NGEFKFRGHH 720 GSYRVEVVTP AGKVSQEFTV DKDDSPMVLN INV* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-14 | 192 | 345 | 161 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 3.0e-19 | 16 | 160 | 146 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 7.0e-29 | 397 | 667 | 293 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 8.0e-71 | 411 | 697 | 307 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 9.0e-75 | 447 | 693 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY91350.1 | 0 | 17 | 753 | 22 | 756 | hypothetical protein OsI_12971 [Oryza sativa Indica Group] |
| RefSeq | NP_001050876.1 | 0 | 17 | 753 | 22 | 756 | Os03g0672900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002301133.1 | 0 | 6 | 753 | 324 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 17 | 351 | 2 | 309 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002466685.1 | 0 | 10 | 753 | 17 | 748 | hypothetical protein SORBIDRAFT_01g012210 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 2e-33 | 416 | 667 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 2e-33 | 416 | 667 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1nq6_A | 1e-28 | 416 | 688 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1x_A | 4e-28 | 437 | 666 | 39 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1i1w_A | 4e-28 | 437 | 666 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX570690 | 276 | 479 | 754 | 0 |
| EL428755 | 280 | 414 | 693 | 0 |
| EX570691 | 262 | 479 | 740 | 0 |
| HO789518 | 279 | 453 | 731 | 0 |
| FQ324200 | 258 | 497 | 754 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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