Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g27257.1 |
Family | CBM22 |
Protein Properties | Length: 542 Molecular Weight: 58875.9 Isoelectric Point: 4.7647 |
Chromosome | Chromosome/Scaffold: 1 Start: 22347715 End: 22349719 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 12 | 140 | 3.3e-26 |
NLVKNSTAEEDGGGWAPVGSRTTVLSVHNDGLLVAGRADDEDGMRQAIPDGALKPRVTYRVTGWISLQGTAGSGAAEVRVSLRVEGGGSDDEACSWVECA EVAAGGWTEINGTFRLKTEPRAASVYVHG | |||
GH10 | 195 | 481 | 0 |
VQLDNAFPFGSCINGTVVQNGAFVDFFSNHFSWAVFENELKWYHTEPQQGQVSYADADALLGFCERHGKRVRGHCVFWAVESNVQQWVKDLGRDDLQPAV KARLEGLVSRYAGRFGHYDVNNEMLHGRFFRDRLGEGAPAIMFREAARIDPGAQLFVNDYNVECGDDPNATPDKYMELISELQRGGATVGGIGLQGHVTR PVGEVVSGALDRLAATGIPIWFTELDVSEPDVGLRAADLEVMLREAFAHPAVHGVVLWGFMQGQMWRQDAYLVDADGTVNEAGQMFL |
Full Sequence |
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Protein Sequence Length: 542 Download |
MASTQEVAFN VNLVKNSTAE EDGGGWAPVG SRTTVLSVHN DGLLVAGRAD DEDGMRQAIP 60 DGALKPRVTY RVTGWISLQG TAGSGAAEVR VSLRVEGGGS DDEACSWVEC AEVAAGGWTE 120 INGTFRLKTE PRAASVYVHG APAGVDVMVK DLRVFATDRQ SRFRELQDKT DKARKRDVVL 180 KLGGAAGEAA SIRVVQLDNA FPFGSCINGT VVQNGAFVDF FSNHFSWAVF ENELKWYHTE 240 PQQGQVSYAD ADALLGFCER HGKRVRGHCV FWAVESNVQQ WVKDLGRDDL QPAVKARLEG 300 LVSRYAGRFG HYDVNNEMLH GRFFRDRLGE GAPAIMFREA ARIDPGAQLF VNDYNVECGD 360 DPNATPDKYM ELISELQRGG ATVGGIGLQG HVTRPVGEVV SGALDRLAAT GIPIWFTELD 420 VSEPDVGLRA ADLEVMLREA FAHPAVHGVV LWGFMQGQMW RQDAYLVDAD GTVNEAGQMF 480 LNLQREWKTD VRGNVDGDGS FAFRGFHGSY VAQIVSEAGE VQLKAFTVEK GDTTLVLDLD 540 A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 3.0e-11 | 11 | 143 | 140 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 5.0e-41 | 179 | 465 | 314 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-70 | 199 | 482 | 304 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-78 | 234 | 480 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK73560.1 | 0 | 2 | 539 | 3 | 553 | AF287724_1 1,4-beta-D xylan xylanohydrolase [Expression vector pFL723] |
EMBL | CAH60861.1 | 0 | 25 | 539 | 16 | 553 | endo-1,4-beta-xylanase [Hordeum vulgare subsp. vulgare] |
EMBL | CAH60862.1 | 0 | 22 | 539 | 10 | 551 | endo-1,4-beta-xylanase [Hordeum vulgare] |
EMBL | CAH60863.1 | 0 | 22 | 539 | 10 | 551 | endo-1,4-beta-xylanase [Hordeum vulgare subsp. vulgare] |
GenBank | EAY97420.1 | 0 | 1 | 540 | 1 | 568 | hypothetical protein OsI_19350 [Oryza sativa Indica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1tux_A | 3e-32 | 203 | 474 | 18 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 2e-31 | 203 | 474 | 18 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 2e-31 | 203 | 474 | 18 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1ta3_B | 3e-31 | 203 | 461 | 17 | 277 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 2bnj_A | 1e-30 | 203 | 474 | 18 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO149443 | 228 | 190 | 416 | 0 |
HO149710 | 243 | 177 | 414 | 0 |
HO159988 | 226 | 190 | 414 | 0 |
GO850973 | 328 | 125 | 449 | 0 |
FL860597 | 240 | 254 | 490 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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