y
Basic Information | |
---|---|
Species | Brachypodium distachyon |
Cazyme ID | Bradi1g28627.1 |
Family | CBM22 |
Protein Properties | Length: 1100 Molecular Weight: 123269 Isoelectric Point: 7.0151 |
Chromosome | Chromosome/Scaffold: 1 Start: 23922677 End: 23929699 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM22 | 389 | 522 | 1.6e-28 |
VIKNPQFEEGLSNWSGRGCNICRHEFTAYGNVKPLSGSYFASATGRIHNWNGIQQDITGRVQRKVFYEISSPVRIFGSSNETEVRATLWVQEYGRERYVC ISKNQASDKRWTHLKGKFLLHAPFSKAVLFIEGP | |||
CBM22 | 218 | 356 | 2.7e-31 |
NIILNCDFSEGLHSWHPIYCHAYVASQWSGFLDGIRGNSGENYAVVTKRTEHWQGLEQDITDRVSTGIAYAVSAYVRVDGNIHGKTEVKATLRLQNQDES THYSSVGRVLASKEKWEKLEGTFSLTNMPKCVVFYLEGP | |||
CBM22 | 50 | 187 | 1.8e-31 |
NILPNSDFSEDIRSWHPNGCHAFVAVEGSGYHNGIRPHSGSSYAVLTHRTQSWQGLEQDLTENITVGTKYVVAAYVRVHGELHEPVGVQATLKLEDDGST NYRSVGRVLASQERWEKLEGSFELTSIPSRLVFYLEGP | |||
CBM22 | 557 | 697 | 1.2e-38 |
NIMQNSTFSRGLAGWSPMGSCRLSIHTESPHMLSSILKDPLNRKHISGSYVLATNRTDVWMGPSQVITDKLRLHTTYRVSAWVRAGSGGHGRHHVNVCLG VDDQWVNGGQVEADGDQWYEIKGAFKLQKQPSKVIAYVQGP | |||
GH10 | 755 | 1038 | 0 |
QTENSFAFGSCIGRSNIENEDLADFFVKNFNWAVFENELKWYWTEAEQGKLNYKDSDELLEFCQKHNIRVRGHCLFWEVEDSVQPWIRSLHGHHLMAAIQ SRLQSLLSRYKGRFKHHDVNNEMLHGSFYQDRLGRDIRAHMFREAHKLDPSAVLFVNDYNVEDGCDSKSTPEKFIEQIVDLQERGAPVGGIGVQGHISHP VGDIICDSLDKLSILGLPIWITELDVTAENEHIRADDLEVCLRECFAHPAVEGVILWGFWEMFMFREHAHLIDADGTINEAGKR |
Full Sequence |
---|
Protein Sequence Length: 1100 Download |
MMRRCGWLPS LCRPRRGGRA AALAPNPDPP PPEPKGEEEH GASDKAVMEN ILPNSDFSED 60 IRSWHPNGCH AFVAVEGSGY HNGIRPHSGS SYAVLTHRTQ SWQGLEQDLT ENITVGTKYV 120 VAAYVRVHGE LHEPVGVQAT LKLEDDGSTN YRSVGRVLAS QERWEKLEGS FELTSIPSRL 180 VFYLEGPPAG VDLLIDSVTI SCKKAERTPS SLIGGTTNII LNCDFSEGLH SWHPIYCHAY 240 VASQWSGFLD GIRGNSGENY AVVTKRTEHW QGLEQDITDR VSTGIAYAVS AYVRVDGNIH 300 GKTEVKATLR LQNQDESTHY SSVGRVLASK EKWEKLEGTF SLTNMPKCVV FYLEGPPAGA 360 DLIIDSVTIA RLEHKQSKEV KSPSGIETVI KNPQFEEGLS NWSGRGCNIC RHEFTAYGNV 420 KPLSGSYFAS ATGRIHNWNG IQQDITGRVQ RKVFYEISSP VRIFGSSNET EVRATLWVQE 480 YGRERYVCIS KNQASDKRWT HLKGKFLLHA PFSKAVLFIE GPPAGIDILV DGLVLSPARK 540 ILAAPRPKVE NVMYGANIMQ NSTFSRGLAG WSPMGSCRLS IHTESPHMLS SILKDPLNRK 600 HISGSYVLAT NRTDVWMGPS QVITDKLRLH TTYRVSAWVR AGSGGHGRHH VNVCLGVDDQ 660 WVNGGQVEAD GDQWYEIKGA FKLQKQPSKV IAYVQGPPSG VDIRVMGFQI YAVDRKARFE 720 YLKEKSDKVR KRDIIVKFQE SNAANLVGSA IRIQQTENSF AFGSCIGRSN IENEDLADFF 780 VKNFNWAVFE NELKWYWTEA EQGKLNYKDS DELLEFCQKH NIRVRGHCLF WEVEDSVQPW 840 IRSLHGHHLM AAIQSRLQSL LSRYKGRFKH HDVNNEMLHG SFYQDRLGRD IRAHMFREAH 900 KLDPSAVLFV NDYNVEDGCD SKSTPEKFIE QIVDLQERGA PVGGIGVQGH ISHPVGDIIC 960 DSLDKLSILG LPIWITELDV TAENEHIRAD DLEVCLRECF AHPAVEGVIL WGFWEMFMFR 1020 EHAHLIDADG TINEAGKRYL ALKQEWLSHA NGDIDHRGEF KFRGYHGSYT IEIATPSGKV 1080 TRSFVVDKEN PVQVVTLNI* 1140 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-15 | 50 | 189 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 2.0e-18 | 218 | 358 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 3.0e-39 | 747 | 1013 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 7.0e-72 | 757 | 1043 | 307 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-76 | 793 | 1038 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ03745.1 | 0 | 38 | 1099 | 20 | 1082 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
GenBank | EAZ39688.1 | 0 | 38 | 1099 | 20 | 1082 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
RefSeq | NP_001059561.1 | 0 | 1 | 1099 | 1 | 1101 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002301133.1 | 0 | 49 | 1099 | 1 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002459803.1 | 0 | 1 | 1099 | 1 | 1098 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 5e-30 | 746 | 1017 | 23 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 5e-30 | 746 | 1017 | 23 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1nq6_A | 5e-29 | 762 | 1034 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1x_A | 7e-29 | 762 | 1033 | 18 | 289 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1w_A | 7e-29 | 762 | 1033 | 18 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GO850973 | 328 | 681 | 1008 | 0 |
GT037746 | 297 | 804 | 1100 | 0 |
GT861812 | 255 | 560 | 814 | 0 |
GT861812 | 173 | 222 | 381 | 0.00000000000008 |
GT861812 | 149 | 54 | 195 | 0.0000000000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|