| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g71040.1 |
| Family | CBM22 |
| Protein Properties | Length: 580 Molecular Weight: 64254.3 Isoelectric Point: 6.99 |
| Chromosome | Chromosome/Scaffold: 1 Start: 69161886 End: 69166244 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 54 | 172 | 3.7e-21 |
| LIVNPDFNAGLQGWSVFGYGSVGEATSAATGNRYAVARNRTRPYQSVSQKVYLQNDTHYTLSAWLQVSDGSADVIAVVKTAGGGFVHSGGVDARSGCWSI LKGGLTAAASGPAELYFES | |||
| GH10 | 232 | 494 | 0 |
| RNGFPLGAAMSQEILRNQAYQSWFTKRFTVTTFENEMKWYSTEQAQGREDYSVPDAMVRFARGHGIKVRGHNIFWDDPGTQPGWVRNLSPDQLRRAADRR IKSVMSRYAGKVIAWDVVNENVHFDFYEGKFGWQASPAFYRKAHQIDGGALMSMNDYNTLEQPGDTNCLPSKYLRKLWQIKGFPGNGNAARMAIGLEGHF SAEPNIPYVRAALDAMAQANVPIWVTEIDVQPGPNQAWHLEQVMREVYSHPAVHGIVLWTAWH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 580 Download |
| MRALTMEKPA AVFLLVWAAA LLNAALMVQS IPYDYSSSSE CLAEPLEPHY GGGLIVNPDF 60 NAGLQGWSVF GYGSVGEATS AATGNRYAVA RNRTRPYQSV SQKVYLQNDT HYTLSAWLQV 120 SDGSADVIAV VKTAGGGFVH SGGVDARSGC WSILKGGLTA AASGPAELYF ESNATVDIWV 180 DNVSLQPFSR EEWHAHRVDA TKKARKKTVR LRARDNAGQP LPGARMHVEH IRNGFPLGAA 240 MSQEILRNQA YQSWFTKRFT VTTFENEMKW YSTEQAQGRE DYSVPDAMVR FARGHGIKVR 300 GHNIFWDDPG TQPGWVRNLS PDQLRRAADR RIKSVMSRYA GKVIAWDVVN ENVHFDFYEG 360 KFGWQASPAF YRKAHQIDGG ALMSMNDYNT LEQPGDTNCL PSKYLRKLWQ IKGFPGNGNA 420 ARMAIGLEGH FSAEPNIPYV RAALDAMAQA NVPIWVTEID VQPGPNQAWH LEQVMREVYS 480 HPAVHGIVLW TAWHPQGCYV MCLTDNGFRN LPVGDVVDKL IGEWKTHSHV GVADAEGYYE 540 AELFHGEYKV TVAHPAANST AVQSLMVDKE SDNEYTIHV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-7 | 52 | 172 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-30 | 257 | 461 | 215 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-49 | 229 | 490 | 286 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 4.0e-69 | 268 | 517 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94510.1 | 0 | 8 | 579 | 4 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74705.1 | 0 | 8 | 579 | 4 | 579 | hypothetical protein OsI_10421 [Oryza sativa Indica Group] |
| GenBank | EEE58525.1 | 0 | 8 | 579 | 4 | 579 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| GenBank | EEE58525.1 | 0 | 27 | 467 | 561 | 986 | hypothetical protein OsJ_09814 [Oryza sativa Japonica Group] |
| RefSeq | XP_002465685.1 | 0 | 10 | 579 | 14 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-30 | 237 | 517 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1e0v_A | 1e-23 | 232 | 522 | 11 | 302 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 2e-23 | 232 | 522 | 11 | 302 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0m_A | 2e-23 | 232 | 522 | 11 | 302 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0l_A | 2e-23 | 232 | 522 | 11 | 302 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
