y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g02320.1 |
Family | CBM22 |
Protein Properties | Length: 590 Molecular Weight: 64153.7 Isoelectric Point: 5.4992 |
Chromosome | Chromosome/Scaffold: 2 Start: 1580768 End: 1583109 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 22 | 183 | 3.6e-22 |
NLIKNSTLEDGLAGWAPLGACTKLSARVEEPAMVPTESINEDYKPSGRYILASSRECQEDGLCQPIPASALKPRVTYRVAGWISLGAGCADNGDAVTDAV VRVNIRLDGNGVGDEDKEGGKKKCSVVEGGVVCAEAGKWTELKGAFRLKACPAAGAMVHVQG | |||
GH10 | 243 | 531 | 0 |
VMQMDTSFAFGACINPAVIQDQGFVDFFTKHFDWAVFENELKWYHTEPAQGQLNYADTDALLDFCDAHGKPVRGHCIFWAVDNVVQQWVKALDKDGLNAA VQARLNSLLTRYAGRFPHYDVNNEMLHGSFFQTRLGDDINAFMFKETARIDPGATLFVNDYNVEGGMDPNATPEKYIAQINALQEKGAPVGGIGLQGHVT NPVGEVVCDALDKLATTDLPIWLTELDVCESDVDLRAEDLEVVLREAYAHPGVEGVIFWGFMQGHMWRQDACLVNADGTVNDAGERFID |
Full Sequence |
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Protein Sequence Length: 590 Download |
MGCARCTMAC CAAQHEVVFD ANLIKNSTLE DGLAGWAPLG ACTKLSARVE EPAMVPTESI 60 NEDYKPSGRY ILASSRECQE DGLCQPIPAS ALKPRVTYRV AGWISLGAGC ADNGDAVTDA 120 VVRVNIRLDG NGVGDEDKEG GKKKCSVVEG GVVCAEAGKW TELKGAFRLK ACPAAGAMVH 180 VQGAPPGVDV KVMDLQVFAT DRKARFKKLK KKTDKVRRRD VVLKFGGAGS GSASAISGAS 240 IRVMQMDTSF AFGACINPAV IQDQGFVDFF TKHFDWAVFE NELKWYHTEP AQGQLNYADT 300 DALLDFCDAH GKPVRGHCIF WAVDNVVQQW VKALDKDGLN AAVQARLNSL LTRYAGRFPH 360 YDVNNEMLHG SFFQTRLGDD INAFMFKETA RIDPGATLFV NDYNVEGGMD PNATPEKYIA 420 QINALQEKGA PVGGIGLQGH VTNPVGEVVC DALDKLATTD LPIWLTELDV CESDVDLRAE 480 DLEVVLREAY AHPGVEGVIF WGFMQGHMWR QDACLVNADG TVNDAGERFI DLRREWTSHA 540 RGKIDSDGHF KFRGYHGSYV VQLSTATGKM HKTFSVEKGD TPLVLDMDV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 5.0e-37 | 272 | 511 | 260 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-72 | 250 | 531 | 305 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-77 | 283 | 529 | 271 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28310.1 | 0 | 8 | 589 | 1 | 565 | unknown [Zea mays] |
GenBank | EAY72426.1 | 0 | 8 | 589 | 1 | 557 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
RefSeq | NP_001041947.1 | 0 | 8 | 589 | 1 | 557 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147907.1 | 0 | 8 | 589 | 1 | 566 | LOC100281517 [Zea mays] |
RefSeq | XP_002455241.1 | 0 | 8 | 589 | 1 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-30 | 280 | 523 | 46 | 289 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1i1w_A | 2e-30 | 280 | 523 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 6e-30 | 280 | 523 | 46 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 9e-30 | 280 | 523 | 46 | 289 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
PDB | 1gor_A | 1e-29 | 280 | 523 | 46 | 289 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT807565 | 233 | 358 | 590 | 0 |
FL860597 | 241 | 303 | 540 | 0 |
FL874412 | 253 | 242 | 494 | 0 |
DV483049 | 263 | 1 | 263 | 0 |
DT708535 | 192 | 251 | 442 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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