| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi3g15027.1 |
| Family | CBM53 |
| Protein Properties | Length: 1718 Molecular Weight: 191453 Isoelectric Point: 4.62 |
| Chromosome | Chromosome/Scaffold: 3 Start: 13304489 End: 13316066 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 835 | 918 | 9.7e-30 |
| SVIDLYLNRDLTALASEPDVVIKGAFNGWKWRLFTERLNKSDLGGVWWSCKLYIPKEAYRLDFVFFNGRSVYENNGNNDFFIEI | |||
| CBM53 | 1171 | 1259 | 3.8e-33 |
| GTTVEIIYNPSNTVLNGKPEVWFRGSFNLWMHPSGALPPQKMVKVQDGSLLKATVSVPPDAYMLDFVFSESEDGGIYDNRNGMDYHIPV | |||
| CBM53 | 1009 | 1097 | 7.2e-34 |
| GDTVRLYYNRNSRPLMYSTEIWMHGGYNNWTDGLSIVERLVKCNDKNGDWWHADVILPEKALVLDWVLADGPPGNARTYDNNGRQDFHA | |||
| GT5 | 1270 | 1712 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHTVEVILPKYDCLKQSSVKNLHLYTSFSWGGTEIKVWTGLVEDLLVYFLEPQNGMFEVGCVYGRNDD RRFGFFCHSALEFLLQNGSSPHIIHCHDWSSAPVAWIYKEHYAQSRLASARVVFTIHNLEFGAQYISKAMAYCDKATTVSHTYSREVTGHGAIAPHREKF YGILNGIDQDIWDPYTDDFLPVSYTSENVVEGKSAAKRALQQKFGLQQTDVPIVGIITRLTPQKGIHLIKHAIHRTLESNGQVVLLGSAPDPRIQGDFCR LADSLHGVYHGRVKLALTYDEPLSRLIYAGSDFILVPSIFEPCGLTQLVAMRYGSVPIVRKTGGLYDTVFDVDNDRERARSLGLEPNGFSFNGADSNGVD YALNRAIAAWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1718 Download |
| MAMALRPQSP LCPRSRQQPL VVRPAGGAGL PQLFLYMMRA LLILYESVFG CQQTFISDQQ 60 IYSKQDCSMH GNKFSLCLSK LGHADSPNRK SRRTISPHVE VISSRGYTPR LTVELSTKKR 120 EDEETVGTYN RLFSTDATEW TGSREAGTAE ADTPQNASTG SIMGEGDVVD QDIFEVDTPS 180 SVTAGRVDAA GKAGVEQDIF EVDLSATALS SAIIGGLDMM DEDGAVQEQE SFEAVLSGNV 240 SSSPTIGEVD VVDEAGPAQD TFEVTVSGNV STSAMMGEMD AVDEAGSDHD SAETYLSGKG 300 SSSVLMMGLN AVDEVGADYD IFNIDLSGNV SRSATMGEVE AVDEAGTDHG TFGTYLSIAA 360 TGEVGVVDEA GVDRDIFETD LSGNVSRSAA TGQVNAVDEA GADQDKFKVN LSGNIAISVA 420 HEEVDVMDDA RAEGTLEMDL SGSVSGNDEE EAYEQLYPAL STIPMGGNAM DKTPVCLKPE 480 LTLVRVHEQG ESNLSVHEQE ESTVTFYEQN QLAIPFREQE LTIIAFDKQN LPTAKFPKQD 540 QSIAALSEQK KSIVASYRQD RSILDLPEQH QSIIGSHKHD KSIADASEQI HSIVGSFKQR 600 QSIVAFRKQD QAIVSVPKQK QSIVAFRKQD LSIVGLQKQN VSIIDTSGEE QTKQVAVIDR 660 HDALHMKGVE AKDEYYTYQK DGGHALHVNF DVDNLLQKHQ TERTEEAVGM TTSKKVNEEH 720 ISMTEDQIGA AKEQMIVTED GLSMNEVGTG VGDKVEHLLS EEELSQAEDE VGLIEDDGQY 780 EVDETSVSVE PDIQELPQDV VDPHELQRML QELAGKNYSM GNKLFVFPEV VKADSVIDLY 840 LNRDLTALAS EPDVVIKGAF NGWKWRLFTE RLNKSDLGGV WWSCKLYIPK EAYRLDFVFF 900 NGRSVYENNG NNDFFIEIES TMDEDIFEDF LVKEKQRELE RLAIEEAERR TQTEEQRRRK 960 EEKAADEAIW AQVKAEVETK KNKLHNMLSL ARTCVDNLWY TDTSTDTRGD TVRLYYNRNS 1020 RPLMYSTEIW MHGGYNNWTD GLSIVERLVK CNDKNGDWWH ADVILPEKAL VLDWVLADGP 1080 PGNARTYDNN GRQDFHAILP NVWTEEGYWV QEEHNIYTRL LQERREREEA IKRKTERSAK 1140 MKAEMKAKTM RRFLLSQKHI VYTEPLEICA GTTVEIIYNP SNTVLNGKPE VWFRGSFNLW 1200 MHPSGALPPQ KMVKVQDGSL LKATVSVPPD AYMLDFVFSE SEDGGIYDNR NGMDYHIPVS 1260 DSIGTEDHMH IVHIAVEMAP IAKVGGLGDV VTSLSRAVQD LGHTVEVILP KYDCLKQSSV 1320 KNLHLYTSFS WGGTEIKVWT GLVEDLLVYF LEPQNGMFEV GCVYGRNDDR RFGFFCHSAL 1380 EFLLQNGSSP HIIHCHDWSS APVAWIYKEH YAQSRLASAR VVFTIHNLEF GAQYISKAMA 1440 YCDKATTVSH TYSREVTGHG AIAPHREKFY GILNGIDQDI WDPYTDDFLP VSYTSENVVE 1500 GKSAAKRALQ QKFGLQQTDV PIVGIITRLT PQKGIHLIKH AIHRTLESNG QVVLLGSAPD 1560 PRIQGDFCRL ADSLHGVYHG RVKLALTYDE PLSRLIYAGS DFILVPSIFE PCGLTQLVAM 1620 RYGSVPIVRK TGGLYDTVFD VDNDRERARS LGLEPNGFSF NGADSNGVDY ALNRAIAAWF 1680 DARDWFHSLC KRVMEQDWSW NRPALDYIEL YHSARKF* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02095 | glgA | 1.0e-153 | 1269 | 1714 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 7.0e-161 | 1269 | 1716 | 484 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-167 | 1270 | 1713 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 717 | 1716 | 1003 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF87999.1 | 0 | 1 | 1717 | 1 | 1628 | AF258608_1 starch synthase III [Triticum aestivum] |
| GenBank | AAF88000.1 | 0 | 1 | 1717 | 1 | 1611 | starch synthase III [Aegilops tauschii] |
| DDBJ | BAD05589.1 | 0 | 1 | 1717 | 1 | 1790 | putative starch synthase DULL1 [Oryza sativa Japonica Group] |
| GenBank | EEC83025.1 | 0 | 3 | 1717 | 1 | 1781 | hypothetical protein OsI_28103 [Oryza sativa Indica Group] |
| GenBank | EEE68179.1 | 0 | 3 | 1717 | 1 | 1781 | hypothetical protein OsJ_26314 [Oryza sativa Japonica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 1269 | 1712 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 1269 | 1715 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 1269 | 1715 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 1269 | 1715 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 1269 | 1715 | 1 | 477 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO794758 | 568 | 1151 | 1717 | 0 |
| HO778003 | 737 | 782 | 1513 | 0 |
| HO651392 | 412 | 1306 | 1716 | 0 |
| GT033751 | 341 | 1320 | 1660 | 0 |
| HO794758 | 110 | 816 | 918 | 7.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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