| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10014016m |
| Family | PL1 |
| Protein Properties | Length: 366 Molecular Weight: 40344.5 Isoelectric Point: 8.0489 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2956540 End: 2958683 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 101 | 280 | 0 |
| VFDVSGTINLSSFVSVSSHKTVDGRGQRVKITGKGLRLKECENVIICNLEFEGGVGPDADAIQIKPKSHNIWIDRCSLKNYYDGLIDITRESTDITVSRC HFMNHNKTMLIGADTSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLFNNYTRHWSIYAVGAGVESQIYSQCNIYEAA | |||
| Full Sequence |
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| Protein Sequence Length: 366 Download |
| MGNLHGLHRS HHGASSFPGE TPNAPFPPYT YPPAPSSSSM TVEPYCHVDS SLRSLAGKAE 60 GFGCAAVGGL NGPICRVTSL ADEGPGSLRE ACRRPEPLWI VFDVSGTINL SSFVSVSSHK 120 TVDGRGQRVK ITGKGLRLKE CENVIICNLE FEGGVGPDAD AIQIKPKSHN IWIDRCSLKN 180 YYDGLIDITR ESTDITVSRC HFMNHNKTML IGADTSHVTD RCIRVTIHHC FFDGTRQRHP 240 RVRFAKVHLF NNYTRHWSIY AVGAGVESQI YSQCNIYEAA EKKTVFKYIT EKAADKEKPG 300 AGFVRSEGDL LLNGAKSCLS QDGGDRHVFS PTQHYSEWTV ETPSEKLKNY LKHGTGWQNL 360 PLPLD* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 8.0e-41 | 101 | 275 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 4.0e-51 | 49 | 344 | 318 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 7.0e-69 | 100 | 280 | 193 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 365 | 1 | 380 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 36 | 365 | 54 | 383 | unknown [Populus trichocarpa] |
| RefSeq | NP_187565.1 | 0 | 1 | 365 | 1 | 372 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002309435.1 | 0 | 41 | 365 | 3 | 327 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 41 | 365 | 3 | 327 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2e-40 | 49 | 335 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2e-40 | 49 | 335 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 5e-28 | 113 | 277 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 3e-25 | 67 | 277 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 1e-24 | 89 | 343 | 38 | 300 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY442268 | 279 | 1 | 279 | 0 |
| DY289690 | 304 | 44 | 344 | 0 |
| DW066041 | 299 | 65 | 363 | 0 |
| JG177860 | 305 | 60 | 364 | 0 |
| DY275282 | 326 | 40 | 365 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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