Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10014319m |
Family | CBM53 |
Protein Properties | Length: 799 Molecular Weight: 91829 Isoelectric Point: 6.975 |
Chromosome | Chromosome/Scaffold: 2 Start: 35354776 End: 35363026 |
Description | starch synthase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 2 | 62 | 3.4e-22 |
GAFNDWRWKSFTFRLNKTHLKGDWWSCQVHVPKEAFKIDFVFFNGQNIYENNDQKDFCIAV | |||
CBM53 | 155 | 243 | 9.2e-34 |
LVRLHYNKQSSSLAHAKELWIHGGYNNWKDGLSIVARLVSSERTDGDWWYAKVSVPDQALVLDWVFADGPPRKAIVYDNNSRQDFHAIV | |||
GT5 | 362 | 794 | 0 |
STHVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLKFSDVKDLGYNRSYHWGGTEIKVWFGKVEGLSVYFLEPQNGFFSKGCVYGCNNDKERFAFFCHAA LEFLLQGGFHPDIIHCHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNLEFGTHHIGKAMTYADKATTVSHTYSKEVAGDPAIAPHLHKFCGILNGIDQD IWDPFNDKFIPVSYTSENLVEGKRAAKEALQQKVGLRKSDLPLVGIITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFVNLANELHSSHS DRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLVAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQGLDLEPNGFSFDGADSAGVDYALNRAISAY YDGREWLNSLCKTVMEQDWSWNRPALDYMELYR |
Full Sequence |
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Protein Sequence Length: 799 Download |
MGAFNDWRWK SFTFRLNKTH LKGDWWSCQV HVPKEAFKID FVFFNGQNIY ENNDQKDFCI 60 AVEGLMDALA FEDFLLEEKR REQEKLAKEK AEQERQEEER RRIEAEHVAI EADRAHARVE 120 TERKREMLRE LKKKAARSVD NVWYIEPSEF KGEDLVRLHY NKQSSSLAHA KELWIHGGYN 180 NWKDGLSIVA RLVSSERTDG DWWYAKVSVP DQALVLDWVF ADGPPRKAIV YDNNSRQDFH 240 AIVPKSIPDE LYWVEEERQT FKKLQEERRL KEEAARAKAE KTARMKAETK ERTLKRFLLS 300 QKHIVYTDPL DVQAGTTVTV FYNPANTVLN GKSEIWFRCS FNHWTHRMGI LPPQKMVPVE 360 YSTHVGGLGD VVTSLSRAVQ DLNHNVDIIL PKYDCLKFSD VKDLGYNRSY HWGGTEIKVW 420 FGKVEGLSVY FLEPQNGFFS KGCVYGCNND KERFAFFCHA ALEFLLQGGF HPDIIHCHDW 480 SSAPVAWLFK DHYVHYGLSK ARIVFTIHNL EFGTHHIGKA MTYADKATTV SHTYSKEVAG 540 DPAIAPHLHK FCGILNGIDQ DIWDPFNDKF IPVSYTSENL VEGKRAAKEA LQQKVGLRKS 600 DLPLVGIITR LTHQKGIHLI KHAIWRTLDR GGQVVLLGSA PDPRIQNDFV NLANELHSSH 660 SDRARLCLTY DEPLSHLIYA GADFILVPSI FEPCGLTQLV AMRYGSIPVV RKTGGLYDTV 720 FDVDHDKERA QGLDLEPNGF SFDGADSAGV DYALNRAISA YYDGREWLNS LCKTVMEQDW 780 SWNRPALDYM ELYRAARK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 6.0e-13 | 2 | 250 | 255 | + synthase/transferase | ||
PLN02316 | PLN02316 | 1.0e-13 | 138 | 360 | 243 | + synthase/transferase | ||
PLN02316 | PLN02316 | 9.0e-174 | 1 | 365 | 365 | + synthase/transferase | ||
PLN02316 | PLN02316 | 0 | 355 | 798 | 444 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABB46391.1 | 0 | 1 | 798 | 159 | 1025 | soluble starch synthase III [Arabidopsis thaliana] |
GenBank | ABY56823.2 | 0 | 2 | 798 | 412 | 1270 | starch synthase IIIb precursor [Triticum aestivum] |
RefSeq | NP_172637.1 | 0 | 1 | 798 | 159 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 365 | 793 | 16 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 366 | 793 | 17 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 366 | 793 | 17 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 366 | 793 | 17 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 366 | 793 | 17 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO794758 | 444 | 355 | 798 | 0 |
HO651392 | 413 | 387 | 799 | 0 |
EY769481 | 271 | 462 | 732 | 0 |
HO794758 | 71 | 295 | 365 | 4e-25 |
HO794758 | 115 | 138 | 250 | 0.45 |
Sequence Alignments (This image is cropped. Click for full image.) |
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