| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G004500_T01 |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 51209.1 Isoelectric Point: 8.731 |
| Chromosome | Chromosome/Scaffold: 1 Start: 290818928 End: 290820764 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 91 | 429 | 0 |
| WEAACASPRPAVLLVPGGRRYLLKLVVLRGPCRSRVAVTVKGTLVASPNRADWSDSDRRHWIVFRSVDRLTVHGRGSIDGNGHSWWPHSCKINKALPCKA APTALSFHYCTNLRVENLKMMNSQQIHMSIEDCASVQVSRLSITAPGTSPNTDGIHITRSKDVRVTNCKIKTGDDCMSIEDGTHGLHVSGVVCGPGHGIS VGSLGDDDSRAEVSGITIDSVQLHGTTNGARIKTYQGGSGYARDITFQNMAMHGVRNPIVIDQSYCDRAEAEPPCREQRSAVQISDVVFRNIRGTTVTRD AIRMSCSRDVPCRGIVLQNIDLKMQGGKGHAESTCQNAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MASSMKPTML ASTAALPLLA LLLLLLHLSS GALEAVVVSA SNGTAADGAS YTCSGSLTWP 60 SSSHQSVFSL DRYGARGDGR HDDTGALARA WEAACASPRP AVLLVPGGRR YLLKLVVLRG 120 PCRSRVAVTV KGTLVASPNR ADWSDSDRRH WIVFRSVDRL TVHGRGSIDG NGHSWWPHSC 180 KINKALPCKA APTALSFHYC TNLRVENLKM MNSQQIHMSI EDCASVQVSR LSITAPGTSP 240 NTDGIHITRS KDVRVTNCKI KTGDDCMSIE DGTHGLHVSG VVCGPGHGIS VGSLGDDDSR 300 AEVSGITIDS VQLHGTTNGA RIKTYQGGSG YARDITFQNM AMHGVRNPIV IDQSYCDRAE 360 AEPPCREQRS AVQISDVVFR NIRGTTVTRD AIRMSCSRDV PCRGIVLQNI DLKMQGGKGH 420 AESTCQNAKW RKSGKVVPQP CTSKEEGKVG QLLEFLLDHE LASSLRSWSS WSLWN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-97 | 72 | 441 | 372 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-106 | 36 | 442 | 410 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-109 | 95 | 429 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-138 | 58 | 451 | 394 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-142 | 66 | 439 | 376 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001140231.1 | 0 | 1 | 451 | 1 | 448 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | NP_001142092.1 | 0 | 62 | 443 | 87 | 478 | hypothetical protein LOC100274254 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 28 | 445 | 1 | 436 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 30 | 471 | 15 | 455 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 16 | 445 | 12 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 162 | 412 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-18 | 168 | 427 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 168 | 427 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 168 | 427 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 168 | 427 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
