| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G027782_T01 |
| Family | GH28 |
| Protein Properties | Length: 417 Molecular Weight: 43054.6 Isoelectric Point: 6.1576 |
| Chromosome | Chromosome/Scaffold: 8 Start: 56662088 End: 56663985 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 404 | 0 |
| TSACEATGSATVVIPKGDYLVGPLNFTGPCKGSNIAIQLDGNLLGSNDLDKYTASWIELSHVNNIGITGSGTLDGQGTAVYSKSKTDNVKAMPNTLVLFH VINATVAGIKLLNSKFFHINIDNSESITVKDVNITAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKD EKDVSDITVRNCVLKNTTNGVRIKSYVDAESVLTASHLTFENIRMEEVANPIVIDQYFCPQKVCPGKRSNSSHVSVKDVTFRNITGTSSTPEAISLLCSE TQPCSGVSLIDVNVEYAGKNNKTMAVCSNAKGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 417 Download |
| MASAHNALRV FFILAVVCAV CTAKRTGANK EESAAAPGGA AGGSGGTFDI SKLGATSDGK 60 TDCTKAVQDA WTSACEATGS ATVVIPKGDY LVGPLNFTGP CKGSNIAIQL DGNLLGSNDL 120 DKYTASWIEL SHVNNIGITG SGTLDGQGTA VYSKSKTDNV KAMPNTLVLF HVINATVAGI 180 KLLNSKFFHI NIDNSESITV KDVNITAPAD VENTDGVHVG GSSKISILNS TIGTGDDCVS 240 IGPGCNGVLV DSITCGPGQG ISVGCLGRYK DEKDVSDITV RNCVLKNTTN GVRIKSYVDA 300 ESVLTASHLT FENIRMEEVA NPIVIDQYFC PQKVCPGKRS NSSHVSVKDV TFRNITGTSS 360 TPEAISLLCS ETQPCSGVSL IDVNVEYAGK NNKTMAVCSN AKGTAKGSIE ALACLV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-71 | 48 | 415 | 372 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-74 | 47 | 409 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-75 | 48 | 415 | 379 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-89 | 75 | 405 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 8.0e-103 | 47 | 402 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG32118.1 | 0 | 1 | 416 | 1 | 415 | exopolygalacturonase precursor [Zea mays] |
| GenBank | ACG34252.1 | 0 | 2 | 416 | 3 | 428 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001130136.1 | 0 | 1 | 416 | 1 | 416 | hypothetical protein LOC100191230 [Zea mays] |
| RefSeq | NP_001141594.1 | 0 | 2 | 416 | 3 | 428 | hypothetical protein LOC100273711 [Zea mays] |
| RefSeq | XP_002455693.1 | 0 | 1 | 415 | 1 | 412 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 1e-20 | 43 | 404 | 16 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 2e-18 | 135 | 356 | 110 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 4e-16 | 143 | 400 | 83 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 4e-16 | 143 | 400 | 83 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 4e-16 | 143 | 400 | 83 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
