| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | GRMZM2G066675_T01 |
| Family | GH28 |
| Protein Properties | Length: 425 Molecular Weight: 45412.9 Isoelectric Point: 6.8164 |
| Chromosome | Chromosome/Scaffold: 6 Start: 99517227 End: 99519034 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 65 | 413 | 0 |
| ASACGDTGKQTILIPKGDFLVGQLNFTGPCKGDVTIHVDGNLLATMDLSQYKEHGNWIEILRVDNLVITGKGNLDGLGPAVWSKNSCAKKYDCKILPNSL VMDFVNNEEVSGVTLLNSKFFHMKALTSRGRVKAEAEEMYQCKDMLIKDVTVTALGDSPNTDGIHMGDSSGITITNTVISVSDDCISFSPGTSKVNITGV TYGSGHGISIGSLGRYKDEKDDTNINVKDCTLKKTTFGVRIKAYEDAASVLTVSKIHYENIKMEDSANPIFIDMKYCPNKLCTANDASKVTVKDVTFKNI TGTSSTPEAVSLLCSAKIPCTGVTMDDINVEYSGTNNKTMAICTNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 425 Download |
| MACTNNAMRA LFLLVLFCIV HGEKEESKGI DAKASRPGGS FDITKLGASG NGKTDSTKAV 60 QEAWASACGD TGKQTILIPK GDFLVGQLNF TGPCKGDVTI HVDGNLLATM DLSQYKEHGN 120 WIEILRVDNL VITGKGNLDG LGPAVWSKNS CAKKYDCKIL PNSLVMDFVN NEEVSGVTLL 180 NSKFFHMKAL TSRGRVKAEA EEMYQCKDML IKDVTVTALG DSPNTDGIHM GDSSGITITN 240 TVISVSDDCI SFSPGTSKVN ITGVTYGSGH GISIGSLGRY KDEKDDTNIN VKDCTLKKTT 300 FGVRIKAYED AASVLTVSKI HYENIKMEDS ANPIFIDMKY CPNKLCTAND ASKVTVKDVT 360 FKNITGTSST PEAVSLLCSA KIPCTGVTMD DINVEYSGTN NKTMAICTNA KGSTKGCLKE 420 LACF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-61 | 36 | 416 | 386 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-62 | 41 | 424 | 389 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-63 | 41 | 424 | 385 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-105 | 6 | 416 | 411 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-106 | 68 | 411 | 344 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA40851.1 | 0 | 3 | 424 | 1 | 408 | polygalacturonase [Zea mays] |
| EMBL | CAA40910.1 | 0 | 5 | 424 | 1 | 406 | polygalacturonase [Zea mays] |
| EMBL | CAA46680.1 | 0 | 1 | 424 | 1 | 410 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 1 | 424 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35338 | 0 | 1 | 424 | 1 | 410 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000000000008 | 121 | 360 | 102 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000000005 | 224 | 378 | 152 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000005 | 224 | 378 | 152 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000005 | 224 | 378 | 152 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000000005 | 224 | 378 | 152 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
