Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g38061.1 |
Family | PL4 |
Protein Properties | Length: 509 Molecular Weight: 59103 Isoelectric Point: 4.8252 |
Chromosome | Chromosome/Scaffold: 02 Start: 43388760 End: 43404337 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 2 | 328 | 0 |
ASQAVELRIEDNQVIMDNGILQVYLSNLGGLVTRIQYNGIDNLLELRSPVSYVPPLIDLFCSAALLKYWDVVWSEARSIGTIETFERIVGTSFNVVSENE EQVEISFTRKWNPSLKGKRAPLNIDKRYAMLRNSTGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKSRKRGKKQVPPEAVLLVNPVEPEFKGEVDDKYQ YSSEIKDLMPWFWVIIPSNEFRSSGPVKQNLTSHVGPYCLSMFLSAHYAGEDMVLKLQPNKPWKKVFGPSFVYLNTLLDGDDSLELWEDAKYQEEVQRWP YDFPTSEGFQKSSQRDSLCGTLLIRDR | |||
PL4 | 329 | 504 | 0 |
NEEGNFSIDNIRNGDYNLYAWVPGFIEEYWNNVVLTITQEHVVKFGDIIFEPPRDGPTLWEIDIPDRSAAGFYVPDPNPKYINKLFVNQTISLPIYRFRQ YGLWERYAELYPNEDLIYFIQWVSVTTQDWFFAHVTGKQEDGSYQGTTWQIKFNLDDVETSNIYRLRLALASANIS |
Full Sequence |
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Protein Sequence Length: 509 Download |
MASQAVELRI EDNQVIMDNG ILQVYLSNLG GLVTRIQYNG IDNLLELRSP VSYVPPLIDL 60 FCSAALLKYW DVVWSEARSI GTIETFERIV GTSFNVVSEN EEQVEISFTR KWNPSLKGKR 120 APLNIDKRYA MLRNSTGFYS YAIFEHLKEW PAFNIPQIRI VYKLRKDKSR KRGKKQVPPE 180 AVLLVNPVEP EFKGEVDDKY QYSSEIKDLM PWFWVIIPSN EFRSSGPVKQ NLTSHVGPYC 240 LSMFLSAHYA GEDMVLKLQP NKPWKKVFGP SFVYLNTLLD GDDSLELWED AKYQEEVQRW 300 PYDFPTSEGF QKSSQRDSLC GTLLIRDRNE EGNFSIDNIR NGDYNLYAWV PGFIEEYWNN 360 VVLTITQEHV VKFGDIIFEP PRDGPTLWEI DIPDRSAAGF YVPDPNPKYI NKLFVNQTIS 420 LPIYRFRQYG LWERYAELYP NEDLIYFIQW VSVTTQDWFF AHVTGKQEDG SYQGTTWQIK 480 FNLDDVETSN IYRLRLALAS ANISELQM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.001 | 329 | 373 | 45 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 4.0e-8 | 329 | 366 | 38 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 9.0e-17 | 388 | 502 | 115 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-52 | 8 | 277 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-63 | 1 | 196 | 216 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 508 | 1 | 569 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 508 | 1 | 540 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 1 | 508 | 1 | 556 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 508 | 1 | 559 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 508 | 1 | 559 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 363 | 1 | 328 | 0 |
DW479599 | 308 | 1 | 278 | 0 |
DW479600 | 311 | 1 | 281 | 0 |
DT552229 | 306 | 17 | 291 | 0 |
FC896579 | 283 | 82 | 329 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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