y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma05g21081.2 |
Family | PL1 |
Protein Properties | Length: 168 Molecular Weight: 19259.8 Isoelectric Point: 5.0301 |
Chromosome | Chromosome/Scaffold: 05 Start: 25416631 End: 25418416 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 7 | 90 | 3.4e-28 |
TINNMLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVINNDFTEWEMYAIGGSGEPTINSQGNRYMA |
Full Sequence |
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Protein Sequence Length: 168 Download |
MGSIGITINN MLSHHNEVML LGHSDDYLPD SGMQVTIAFN HFGEKLVQRM PRCRRGYIHV 60 INNDFTEWEM YAIGGSGEPT INSQGNRYMA PENPFAKEVT KRVDTQQSKW KGWNWRSEGD 120 ILLNGAFFVA SGEELEVKYE KTYIELMKFI TDRLGPDEEV FNILFFL* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-10 | 6 | 103 | 102 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 9.0e-34 | 2 | 88 | 88 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-37 | 1 | 91 | 92 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 143 | 250 | 393 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 1 | 143 | 231 | 374 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 143 | 251 | 394 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002326380.1 | 0 | 1 | 143 | 182 | 325 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 1 | 143 | 247 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 1.99993e-41 | 1 | 137 | 180 | 318 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 1.99993e-41 | 1 | 137 | 180 | 318 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pe9_B | 0.0000001 | 2 | 155 | 192 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pe9_A | 0.0000001 | 2 | 155 | 192 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1ooc_B | 0.0000001 | 2 | 155 | 192 | 357 | A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG855403 | 135 | 9 | 143 | 0 |
GO525499 | 144 | 1 | 143 | 0 |
DK552940 | 144 | 1 | 143 | 0 |
DK520581 | 144 | 1 | 143 | 0 |
CK287451 | 144 | 1 | 143 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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