| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma07g39040.2 |
| Family | CBM53 |
| Protein Properties | Length: 1083 Molecular Weight: 123506 Isoelectric Point: 6.6112 |
| Chromosome | Chromosome/Scaffold: 07 Start: 43636412 End: 43648807 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 196 | 281 | 6.1e-30 |
| GQDIEVFLNRSVSTLCNEPNVLIKGAFNDWRWKFFTIVLNKTHLLNGDWWSCQLHVPREAYKVDFVFYNGQNVYDNNDRRDFSIPV | |||
| CBM53 | 534 | 622 | 3.2e-30 |
| GSTVTVFYNPCNTNLNGKPEVWFRCSFNRWTHCNGSLPPQKMLHTKYGTYAKAFVKVPLDAYMMDFVFSEKEDGGIIDNNNRMDYHIPI | |||
| CBM53 | 374 | 462 | 1.5e-33 |
| LVRLYYNRTSGPLAQTQEVWIHGGHNNWMDKLSIVERLVKTGSKHGDWWHADVVVPDQAVVLDWVFADGPPGNASSYDNNNVQDFHAIV | |||
| GT5 | 633 | 1076 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDVVLPKYDCLNLSNVKDFQYHRNYFWGGTEIKVWHGKVEGLSVYFLEPQNAFFHAGCVYGCGND AQRFGFFCHAALEFLHQNGFHPDVIHCHDWSSAPVAWLSKEQYRHCDLSKAGVVFTIHNLEFGAHFIGKAMEYTDKATTVSPSYSREVAGNPAIAPHLHK FQGIINGIDPDIWDPFNDEFIPVSYTSEYVVEGKKAAKEALQQRLGLRKADLPLLGVISRLTHQKGIHLIKHAISRTLERGGQVVLLGSAPDSSIQNDFV NLANQLHSLHHDRVRLCLVYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPIVRKTGGLYDTVFDVEHDRDRAQAQGLEPNGFSFDGADALGV DYALNRAISAWYENRHWFNTLCKTVMEQDWSWNRPALDYLELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1083 Download |
| MEMSLQLNCK TTFGNRSTFF GFGAGLFFPT TSQCHRLAGW RSICINASAD FSSRRQKRIF 60 TARPKGHGSD SKKGLVPRPP IGTRIVGEDG NVYTNVPDTS NIGNVEYLDD KSLDYAEIIG 120 IIRESDVHGT YNEVTGETIV EETNDDDDDI IKEEASQLLQ LKLKERLRRL EIERIAQENL 180 SLRNKLFVYP PVVEPGQDIE VFLNRSVSTL CNEPNVLIKG AFNDWRWKFF TIVLNKTHLL 240 NGDWWSCQLH VPREAYKVDF VFYNGQNVYD NNDRRDFSIP VDGGMDVFGF EDFLLEEKRR 300 ELERLAKEQA EKEEQEKEKR KMEAEKAAIE EDRSLARVEV ERKREVLRQL TKNAVKSIDN 360 VWYIEPSEFE GKDLVRLYYN RTSGPLAQTQ EVWIHGGHNN WMDKLSIVER LVKTGSKHGD 420 WWHADVVVPD QAVVLDWVFA DGPPGNASSY DNNNVQDFHA IVTKVIPDEE TWVWEERTIF 480 RKLQEKRRLR EEAMRAKVEK TACIKAEAKK KTLKRFLLSQ KHIVYTQPLH IQAGSTVTVF 540 YNPCNTNLNG KPEVWFRCSF NRWTHCNGSL PPQKMLHTKY GTYAKAFVKV PLDAYMMDFV 600 FSEKEDGGII DNNNRMDYHI PILGGIVKET PMHIVHIAVE MAPIAKVGGL GDVVTSLSRA 660 VQDLNHNVDV VLPKYDCLNL SNVKDFQYHR NYFWGGTEIK VWHGKVEGLS VYFLEPQNAF 720 FHAGCVYGCG NDAQRFGFFC HAALEFLHQN GFHPDVIHCH DWSSAPVAWL SKEQYRHCDL 780 SKAGVVFTIH NLEFGAHFIG KAMEYTDKAT TVSPSYSREV AGNPAIAPHL HKFQGIINGI 840 DPDIWDPFND EFIPVSYTSE YVVEGKKAAK EALQQRLGLR KADLPLLGVI SRLTHQKGIH 900 LIKHAISRTL ERGGQVVLLG SAPDSSIQND FVNLANQLHS LHHDRVRLCL VYDEPLSHLI 960 YAGADFILVP SIFEPCGLTQ LIAMRYGSVP IVRKTGGLYD TVFDVEHDRD RAQAQGLEPN 1020 GFSFDGADAL GVDYALNRAI SAWYENRHWF NTLCKTVMEQ DWSWNRPALD YLELYHAARK 1080 SA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 2.0e-140 | 628 | 1078 | 497 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 8.0e-155 | 632 | 1078 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 1.0e-165 | 632 | 1081 | 486 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-176 | 633 | 1076 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 61 | 1080 | 1043 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF49176.1 | 0 | 1 | 1080 | 1 | 1163 | starch synthase III [Phaseolus vulgaris] |
| EMBL | CAB40374.1 | 0 | 1 | 1080 | 1 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002269011.1 | 0 | 148 | 1080 | 209 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 62 | 1080 | 4 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 101 | 1080 | 101 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 632 | 1076 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 632 | 1076 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 632 | 1076 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 632 | 1076 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 632 | 1076 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 728 | 140 | 867 | 0 |
| HO794758 | 571 | 511 | 1080 | 0 |
| HO651392 | 412 | 669 | 1080 | 0 |
| HO794758 | 111 | 180 | 285 | 0.00002 |
| HO794758 | 122 | 348 | 469 | 3.4 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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