Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma17g35060.1 |
Family | CBM22 |
Protein Properties | Length: 903 Molecular Weight: 99877.9 Isoelectric Point: 6.5089 |
Chromosome | Chromosome/Scaffold: 17 Start: 38999463 End: 39005458 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 15 | 153 | 9.3e-30 |
NILLNHDFSSGLTSWHLNSCTGYVISSKSGTQGGIPMDLDANYAVITDRKECWQGLEQDITNKISIGSTYTVSACVGVSGVSQGSSDVLATLKLEHHDSA TRYLFIGRTSVNNDSWEKLEGTFSLSTMPDRVIIYLEGP | |||
CBM22 | 187 | 323 | 1.6e-30 |
NIIVNPQFDDGLKNWSGRSCKIMLHDSMNDGKIVPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQ YIGIANVQATDKDWITMQGKFLLNGSPSKVVLYLEGP | |||
CBM22 | 358 | 500 | 6.44597e-44 |
NIIENSNLADSTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRMQTWMGPAQTITDKVKLFVTYQVSAWVRIGSAGSSGPQNVNVA LGVDNQWVNGGQTQVSDDMWHEIGGSFRIEKQPSKVMVYVQGP | |||
GH10 | 556 | 824 | 0 |
VIQTHNDFPIGTCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDMLSLCQKHKIQTRGHCIFWEVDETVQQWIKSLNKNDLMTA VQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTASQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHID CPIGPIVSSSLDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAMAHPTVEGLMLWGFWELFMSRD |
Full Sequence |
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Protein Sequence Length: 903 Download |
MAGNISGPSG SKGANILLNH DFSSGLTSWH LNSCTGYVIS SKSGTQGGIP MDLDANYAVI 60 TDRKECWQGL EQDITNKISI GSTYTVSACV GVSGVSQGSS DVLATLKLEH HDSATRYLFI 120 GRTSVNNDSW EKLEGTFSLS TMPDRVIIYL EGPAPGVDLL IRSVVINCST PNDNTTSTGC 180 VSAGDDNIIV NPQFDDGLKN WSGRSCKIML HDSMNDGKIV PKSGKFFASA TERTQSWNGI 240 QQEITGRVQR KLAYEVTALV RIFGNNVSTA DVRATLWVQT PDLREQYIGI ANVQATDKDW 300 ITMQGKFLLN GSPSKVVLYL EGPPPGTDIL LNNLVLKHAA KTPPSTPPDV KNVAFGVNII 360 ENSNLADSTN GWFPLGNCTL SVKTGSPHII PPMARDSLGP HELLSGRYIL VTNRMQTWMG 420 PAQTITDKVK LFVTYQVSAW VRIGSAGSSG PQNVNVALGV DNQWVNGGQT QVSDDMWHEI 480 GGSFRIEKQP SKVMVYVQGP ASGVDLMVAG LQIFPVDRHT RFRYLKIQTD KIRKRDVILK 540 FSGLDSGSYA NTSVKVIQTH NDFPIGTCIS RTNIDNEDFV NFIVKHFNWA VFGNELKWYW 600 TEPQQGNFNY KDADDMLSLC QKHKIQTRGH CIFWEVDETV QQWIKSLNKN DLMTAVQNRL 660 NGLLTRYKGK FSHYDVNNEM LHGSFYQDRL GKDIRANMFK TASQLDPSAT LFVNDYHVED 720 GCDTRSCPDK YIHHILDLQE QGAPVGGIGI QGHIDCPIGP IVSSSLDKLG ILGLPIWFTE 780 LDVSSVNEYV RADDLEVMLR EAMAHPTVEG LMLWGFWELF MSRDHSHLVN AEGDINEAGK 840 RFLALKQEWL SHSRGHVDEQ GQYNFRGFHG TYNVQVVTPS KKISKTFVLD KGDSPLVVSI 900 DL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-14 | 187 | 327 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 7.0e-17 | 357 | 503 | 154 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 9.0e-34 | 553 | 816 | 285 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 9.0e-75 | 596 | 842 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 7.0e-76 | 561 | 846 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 4 | 902 | 19 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 11 | 902 | 90 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 1 | 902 | 150 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 15 | 508 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 186 | 513 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 3e-30 | 565 | 816 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 3e-30 | 565 | 816 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-27 | 555 | 815 | 8 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-27 | 555 | 815 | 8 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 4e-27 | 555 | 815 | 8 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO789518 | 281 | 602 | 882 | 0 |
EX570690 | 295 | 609 | 903 | 0 |
EX570691 | 281 | 609 | 889 | 0 |
EB442796 | 299 | 385 | 683 | 0 |
HO789518 | 36 | 871 | 903 | 0.31 |
Sequence Alignments (This image is cropped. Click for full image.) |
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