| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma17g35060.2 |
| Family | CBM22 |
| Protein Properties | Length: 932 Molecular Weight: 103380 Isoelectric Point: 6.9164 |
| Chromosome | Chromosome/Scaffold: 17 Start: 38999463 End: 39005458 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 44 | 182 | 9.8e-30 |
| NILLNHDFSSGLTSWHLNSCTGYVISSKSGTQGGIPMDLDANYAVITDRKECWQGLEQDITNKISIGSTYTVSACVGVSGVSQGSSDVLATLKLEHHDSA TRYLFIGRTSVNNDSWEKLEGTFSLSTMPDRVIIYLEGP | |||
| CBM22 | 216 | 352 | 1.7e-30 |
| NIIVNPQFDDGLKNWSGRSCKIMLHDSMNDGKIVPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQTPDLREQ YIGIANVQATDKDWITMQGKFLLNGSPSKVVLYLEGP | |||
| CBM22 | 387 | 529 | 6.86636e-44 |
| NIIENSNLADSTNGWFPLGNCTLSVKTGSPHIIPPMARDSLGPHELLSGRYILVTNRMQTWMGPAQTITDKVKLFVTYQVSAWVRIGSAGSSGPQNVNVA LGVDNQWVNGGQTQVSDDMWHEIGGSFRIEKQPSKVMVYVQGP | |||
| GH10 | 585 | 853 | 0 |
| VIQTHNDFPIGTCISRTNIDNEDFVNFIVKHFNWAVFGNELKWYWTEPQQGNFNYKDADDMLSLCQKHKIQTRGHCIFWEVDETVQQWIKSLNKNDLMTA VQNRLNGLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTASQLDPSATLFVNDYHVEDGCDTRSCPDKYIHHILDLQEQGAPVGGIGIQGHID CPIGPIVSSSLDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAMAHPTVEGLMLWGFWELFMSRD | |||
| Full Sequence |
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| Protein Sequence Length: 932 Download |
| MKRFSACCFT SRISKFHSHW KHNHSQSQIM AGNISGPSGS KGANILLNHD FSSGLTSWHL 60 NSCTGYVISS KSGTQGGIPM DLDANYAVIT DRKECWQGLE QDITNKISIG STYTVSACVG 120 VSGVSQGSSD VLATLKLEHH DSATRYLFIG RTSVNNDSWE KLEGTFSLST MPDRVIIYLE 180 GPAPGVDLLI RSVVINCSTP NDNTTSTGCV SAGDDNIIVN PQFDDGLKNW SGRSCKIMLH 240 DSMNDGKIVP KSGKFFASAT ERTQSWNGIQ QEITGRVQRK LAYEVTALVR IFGNNVSTAD 300 VRATLWVQTP DLREQYIGIA NVQATDKDWI TMQGKFLLNG SPSKVVLYLE GPPPGTDILL 360 NNLVLKHAAK TPPSTPPDVK NVAFGVNIIE NSNLADSTNG WFPLGNCTLS VKTGSPHIIP 420 PMARDSLGPH ELLSGRYILV TNRMQTWMGP AQTITDKVKL FVTYQVSAWV RIGSAGSSGP 480 QNVNVALGVD NQWVNGGQTQ VSDDMWHEIG GSFRIEKQPS KVMVYVQGPA SGVDLMVAGL 540 QIFPVDRHTR FRYLKIQTDK IRKRDVILKF SGLDSGSYAN TSVKVIQTHN DFPIGTCISR 600 TNIDNEDFVN FIVKHFNWAV FGNELKWYWT EPQQGNFNYK DADDMLSLCQ KHKIQTRGHC 660 IFWEVDETVQ QWIKSLNKND LMTAVQNRLN GLLTRYKGKF SHYDVNNEML HGSFYQDRLG 720 KDIRANMFKT ASQLDPSATL FVNDYHVEDG CDTRSCPDKY IHHILDLQEQ GAPVGGIGIQ 780 GHIDCPIGPI VSSSLDKLGI LGLPIWFTEL DVSSVNEYVR ADDLEVMLRE AMAHPTVEGL 840 MLWGFWELFM SRDHSHLVNA EGDINEAGKR FLALKQEWLS HSRGHVDEQG QYNFRGFHGT 900 YNVQVVTPSK KISKTFVLDK GDSPLVVSID L* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 9.0e-15 | 216 | 356 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 5.0e-17 | 386 | 532 | 154 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 9.0e-34 | 582 | 845 | 285 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 9.0e-75 | 625 | 871 | 268 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 7.0e-76 | 590 | 875 | 306 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 24 | 931 | 10 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002283550.1 | 0 | 40 | 931 | 90 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301133.1 | 0 | 27 | 931 | 147 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 44 | 537 | 2 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 215 | 542 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 3e-30 | 594 | 845 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 3e-30 | 594 | 845 | 39 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 2e-27 | 584 | 844 | 8 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 2e-27 | 584 | 844 | 8 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 4e-27 | 584 | 844 | 8 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO789518 | 281 | 631 | 911 | 0 |
| EX570690 | 295 | 638 | 932 | 0 |
| EX570691 | 281 | 638 | 918 | 0 |
| EB442796 | 299 | 414 | 712 | 0 |
| HO789518 | 36 | 900 | 932 | 0.27 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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