| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g40100.3 |
| Family | GH28 |
| Protein Properties | Length: 432 Molecular Weight: 46774.9 Isoelectric Point: 4.8812 |
| Chromosome | Chromosome/Scaffold: 19 Start: 46563470 End: 46567022 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 251 | 383 | 9.7e-22 |
| AGLAFGSEMSGGISVIIAEKLHILNSPIGIELKTTRGRGGYMRGIFISDAELENISLGISMTGYSGFHPDDKYDTSSLPVVGDITFKNVIGANISVAGNF SGIVESPFSTICLSNVTFSLSSEPSPSWFCSNV | |||
| GH28 | 92 | 249 | 7.3e-32 |
| ADKGGAQLYVPSGTWLTGSFNLTNHLTLFLERGATIIASQDYSHWDIVDFLPSYGRGIGRYRSLIYGQNLSDVVITGDNGTIDGQGSIWWKLFNSNSLNY TRPNLIEFVDSVDVIISNLTFLDSPAWGIHPVYCSNVQIQNITYRAPAEFPYTSGIVP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 432 Download |
| MQLFLHSIQN FLAPFQFQLV AHMKGLVAVL LLVAISTAVE SNGEDNGGPC KQNALKARPH 60 SVSILEFGAV GDGITLNTVA FENAIFYLKS FADKGGAQLY VPSGTWLTGS FNLTNHLTLF 120 LERGATIIAS QDYSHWDIVD FLPSYGRGIG RYRSLIYGQN LSDVVITGDN GTIDGQGSIW 180 WKLFNSNSLN YTRPNLIEFV DSVDVIISNL TFLDSPAWGI HPVYCSNVQI QNITYRAPAE 240 FPYTSGIVPG AGLAFGSEMS GGISVIIAEK LHILNSPIGI ELKTTRGRGG YMRGIFISDA 300 ELENISLGIS MTGYSGFHPD DKYDTSSLPV VGDITFKNVI GANISVAGNF SGIVESPFST 360 ICLSNVTFSL SSEPSPSWFC SNVIGFSEHV IPEPCPDIQS SYSKFPFSCF SSLYPLFNNV 420 SGHLDHQPQE L* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 1.0e-11 | 56 | 395 | 395 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-14 | 156 | 383 | 273 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 9.0e-17 | 59 | 366 | 367 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 8.0e-17 | 60 | 412 | 410 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 6.0e-33 | 62 | 305 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22951.1 | 0 | 36 | 396 | 12 | 428 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36899.1 | 0 | 36 | 421 | 35 | 474 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002269037.1 | 0 | 36 | 421 | 100 | 539 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002273305.1 | 0 | 23 | 396 | 1 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002516982.1 | 0 | 36 | 413 | 12 | 443 | Polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-21 | 60 | 365 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-21 | 60 | 365 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-21 | 60 | 365 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-21 | 60 | 365 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000009 | 57 | 177 | 152 | 273 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
