| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.009G178700.2 |
| Family | CBM53 |
| Protein Properties | Length: 1139 Molecular Weight: 129734 Isoelectric Point: 7.0265 |
| Chromosome | Chromosome/Scaffold: 09 Start: 13795544 End: 13804683 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 279 | 362 | 2.7e-31 |
| EDIEVFFNRSFSTLNDEQDILIMGAFNDWRWRSFTMRLNKTYFKGDWWSCQIHVPKEAYKMDFVFFNGQNIYDNNDKQDFCIIV | |||
| CBM53 | 454 | 543 | 8.6e-33 |
| DKVKLYYNKTSGPLAHANELWIHGGHNNWCNGLTIVEKFLRSGREGGDWWYAEVVVPGRALVLDWVFADGPPKVATIYDNNNYQDFHAVV | |||
| CBM53 | 615 | 703 | 1.8e-34 |
| GSTVTVFYNPANTVLNGKHEIWFRCSFNRWTHRMGPLPPQRMLPADNGSHVKATVKVPLDAYMMDFVFSEREDGGMFDNKGGMDYHIPV | |||
| GT5 | 714 | 1078 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVNIILPKYDCLNLSHVKDLHYQKSYSWGGTEIKVWFGKVEGLSVYFLEPQNGFVWTGCVYGCKND AERFGFFCHAALEFLHQGGLQPDIIHCHDWSSAPVAWLFKDHYMHYGLSKTRVVFTIHNLEFGAHFIGKAMAYADKATTVSHTYSKEVAGNPAVAPHLHK FHGILNGIDLDIWDPYNDKFIPVPYTSENVVEGKRAAKEALQQRLGLKKSDHPLVGIITRLTHQKGIHLIKHAIWNTLKRNGQVVLLGSAPDPRIQNDFV NLANQLHSSHSDQARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG | |||
| Full Sequence |
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| Protein Sequence Length: 1139 Download |
| MDVSLQLQRP LRFKEVLNHR TDCFKIRPFL GSLSFARTIQ FTPWRCECLP SRVSLRVTAG 60 AADFSKRRQR RLSTRSSKSS KGFGRKTKLG TGNQKRDQKD NGENEDSNIP TLSESEESNQ 120 TEMESTVAVD EESTIALYQK NKVNESEKEE LKEDVPSKTK SYLNAENGSA RKVVEDVLGL 180 QKKELILEND TVSTSRDAAT YEGKHFTDYA ITEEKHLAGT ETDGTVTGKD EKTIEDASAK 240 LKLEMEEKLR KQEIERLAEG NFLKGNKIFV YPQTVRPDED IEVFFNRSFS TLNDEQDILI 300 MGAFNDWRWR SFTMRLNKTY FKGDWWSCQI HVPKEAYKMD FVFFNGQNIY DNNDKQDFCI 360 IVEGGMDVFA FEDFLLEEKR RELEKLAKEQ AEKERQEEEQ RRIEAEKAAS EADRAQAKVE 420 TGKRREILEQ LMKQAPRSVD NIWFIEPNEF KGADKVKLYY NKTSGPLAHA NELWIHGGHN 480 NWCNGLTIVE KFLRSGREGG DWWYAEVVVP GRALVLDWVF ADGPPKVATI YDNNNYQDFH 540 AVVPKSIPEE MFWVEEEHQI FRKLQAERKL REEAIRAKAE KTARMKAEMK ERTLKRFLLS 600 QKHIVYTEPL DVHAGSTVTV FYNPANTVLN GKHEIWFRCS FNRWTHRMGP LPPQRMLPAD 660 NGSHVKATVK VPLDAYMMDF VFSEREDGGM FDNKGGMDYH IPVFGGIVKE PPMHIVHIAV 720 EMAPIAKVGG LGDVVTSLSR AVQDLNHNVN IILPKYDCLN LSHVKDLHYQ KSYSWGGTEI 780 KVWFGKVEGL SVYFLEPQNG FVWTGCVYGC KNDAERFGFF CHAALEFLHQ GGLQPDIIHC 840 HDWSSAPVAW LFKDHYMHYG LSKTRVVFTI HNLEFGAHFI GKAMAYADKA TTVSHTYSKE 900 VAGNPAVAPH LHKFHGILNG IDLDIWDPYN DKFIPVPYTS ENVVEGKRAA KEALQQRLGL 960 KKSDHPLVGI ITRLTHQKGI HLIKHAIWNT LKRNGQVVLL GSAPDPRIQN DFVNLANQLH 1020 SSHSDQARLC LTYDEPLSHL IYAGADFILV PSIFEPCGLT QLTAMRYGSI PVVRKTGGDF 1080 MILYSMLTMI KLELKHKVLN PTDLTSMELM VLESIMPSIG LSLLGMMVGT GLTHCARG* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 5.0e-122 | 713 | 1078 | 412 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 8.0e-127 | 713 | 1078 | 409 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 2.0e-138 | 713 | 1078 | 404 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-147 | 714 | 1078 | 411 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 94 | 1080 | 988 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF49176.1 | 0 | 1 | 1086 | 1 | 1088 | starch synthase III [Phaseolus vulgaris] |
| EMBL | CAA64173.1 | 0 | 1 | 1086 | 1 | 1153 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1086 | 1 | 1065 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 79 | 1086 | 10 | 942 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 72 | 1086 | 1 | 983 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 713 | 1078 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 713 | 1078 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 713 | 1078 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 713 | 1078 | 1 | 400 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 713 | 1078 | 1 | 400 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 724 | 225 | 948 | 0 |
| HO794758 | 486 | 595 | 1080 | 0 |
| HO794758 | 108 | 268 | 366 | 0.009 |
| HO794758 | 61 | 1079 | 1139 | 0.66 |
| HO794758 | 115 | 438 | 550 | 3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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