| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.009G178700.4 |
| Family | CBM53 |
| Protein Properties | Length: 1041 Molecular Weight: 118866 Isoelectric Point: 6.2838 |
| Chromosome | Chromosome/Scaffold: 09 Start: 13796148 End: 13804683 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 157 | 240 | 2.4e-31 |
| EDIEVFFNRSFSTLNDEQDILIMGAFNDWRWRSFTMRLNKTYFKGDWWSCQIHVPKEAYKMDFVFFNGQNIYDNNDKQDFCIIV | |||
| CBM53 | 332 | 421 | 7.7e-33 |
| DKVKLYYNKTSGPLAHANELWIHGGHNNWCNGLTIVEKFLRSGREGGDWWYAEVVVPGRALVLDWVFADGPPKVATIYDNNNYQDFHAVV | |||
| CBM53 | 493 | 581 | 1.6e-34 |
| GSTVTVFYNPANTVLNGKHEIWFRCSFNRWTHRMGPLPPQRMLPADNGSHVKATVKVPLDAYMMDFVFSEREDGGMFDNKGGMDYHIPV | |||
| GT5 | 592 | 1035 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVNIILPKYDCLNLSHVKDLHYQKSYSWGGTEIKVWFGKVEGLSVYFLEPQNGFVWTGCVYGCKND AERFGFFCHAALEFLHQGGLQPDIIHCHDWSSAPVAWLFKDHYMHYGLSKTRVVFTIHNLEFGAHFIGKAMAYADKATTVSHTYSKEVAGNPAVAPHLHK FHGILNGIDLDIWDPYNDKFIPVPYTSENVVEGKRAAKEALQQRLGLKKSDHPLVGIITRLTHQKGIHLIKHAIWNTLKRNGQVVLLGSAPDPRIQNDFV NLANQLHSSHSDQARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDDDKARAEAQGLEPNGFNFDGADGAGV DYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1041 Download |
| MESTVAVDEE STIALYQKNK VNESEKEELK EDVPSKTKSY LNAENGSARK VVEDVLGLQK 60 KELILENDTV STSRDAATYE GKHFTDYAIT EEKHLAGTET DGTVTGKDEK TIEDASAKLK 120 LEMEEKLRKQ EIERLAEGNF LKGNKIFVYP QTVRPDEDIE VFFNRSFSTL NDEQDILIMG 180 AFNDWRWRSF TMRLNKTYFK GDWWSCQIHV PKEAYKMDFV FFNGQNIYDN NDKQDFCIIV 240 EGGMDVFAFE DFLLEEKRRE LEKLAKEQAE KERQEEEQRR IEAEKAASEA DRAQAKVETG 300 KRREILEQLM KQAPRSVDNI WFIEPNEFKG ADKVKLYYNK TSGPLAHANE LWIHGGHNNW 360 CNGLTIVEKF LRSGREGGDW WYAEVVVPGR ALVLDWVFAD GPPKVATIYD NNNYQDFHAV 420 VPKSIPEEMF WVEEEHQIFR KLQAERKLRE EAIRAKAEKT ARMKAEMKER TLKRFLLSQK 480 HIVYTEPLDV HAGSTVTVFY NPANTVLNGK HEIWFRCSFN RWTHRMGPLP PQRMLPADNG 540 SHVKATVKVP LDAYMMDFVF SEREDGGMFD NKGGMDYHIP VFGGIVKEPP MHIVHIAVEM 600 APIAKVGGLG DVVTSLSRAV QDLNHNVNII LPKYDCLNLS HVKDLHYQKS YSWGGTEIKV 660 WFGKVEGLSV YFLEPQNGFV WTGCVYGCKN DAERFGFFCH AALEFLHQGG LQPDIIHCHD 720 WSSAPVAWLF KDHYMHYGLS KTRVVFTIHN LEFGAHFIGK AMAYADKATT VSHTYSKEVA 780 GNPAVAPHLH KFHGILNGID LDIWDPYNDK FIPVPYTSEN VVEGKRAAKE ALQQRLGLKK 840 SDHPLVGIIT RLTHQKGIHL IKHAIWNTLK RNGQVVLLGS APDPRIQNDF VNLANQLHSS 900 HSDQARLCLT YDEPLSHLIY AGADFILVPS IFEPCGLTQL TAMRYGSIPV VRKTGGLYDT 960 VFDVDDDKAR AEAQGLEPNG FNFDGADGAG VDYALNRAIS AWYDGRDWFN SLCKRVMEQD 1020 WSWNRPALDY MELYHAAKKY * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 8.0e-145 | 591 | 1037 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 2.0e-153 | 591 | 1037 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 6.0e-165 | 591 | 1035 | 483 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 6.0e-177 | 592 | 1035 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 42 | 1039 | 999 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF49176.1 | 0 | 28 | 1039 | 177 | 1163 | starch synthase III [Phaseolus vulgaris] |
| EMBL | CAB40374.1 | 0 | 98 | 1039 | 194 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1039 | 128 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 66 | 1039 | 36 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 2 | 1039 | 55 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 591 | 1038 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 591 | 1038 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 591 | 1038 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 591 | 1038 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 591 | 1038 | 1 | 477 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 724 | 103 | 826 | 0 |
| HO794758 | 567 | 473 | 1039 | 0 |
| HO651392 | 411 | 629 | 1039 | 0 |
| HO794758 | 103 | 146 | 244 | 0.006 |
| HO794758 | 135 | 296 | 428 | 1.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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