Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G178700.6 |
Family | CBM53 |
Protein Properties | Length: 733 Molecular Weight: 84509.5 Isoelectric Point: 6.5285 |
Chromosome | Chromosome/Scaffold: 09 Start: 13795544 End: 13800719 |
Description | starch synthase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 279 | 362 | 7.5e-32 |
EDIEVFFNRSFSTLNDEQDILIMGAFNDWRWRSFTMRLNKTYFKGDWWSCQIHVPKEAYKMDFVFFNGQNIYDNNDKQDFCIIV | |||
CBM53 | 454 | 543 | 2.4e-33 |
DKVKLYYNKTSGPLAHANELWIHGGHNNWCNGLTIVEKFLRSGREGGDWWYAEVVVPGRALVLDWVFADGPPKVATIYDNNNYQDFHAVV | |||
CBM53 | 615 | 703 | 5e-35 |
GSTVTVFYNPANTVLNGKHEIWFRCSFNRWTHRMGPLPPQRMLPADNGSHVKATVKVPLDAYMMDFVFSEREDGGMFDNKGGMDYHIPV |
Full Sequence |
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Protein Sequence Length: 733 Download |
MDVSLQLQRP LRFKEVLNHR TDCFKIRPFL GSLSFARTIQ FTPWRCECLP SRVSLRVTAG 60 AADFSKRRQR RLSTRSSKSS KGFGRKTKLG TGNQKRDQKD NGENEDSNIP TLSESEESNQ 120 TEMESTVAVD EESTIALYQK NKVNESEKEE LKEDVPSKTK SYLNAENGSA RKVVEDVLGL 180 QKKELILEND TVSTSRDAAT YEGKHFTDYA ITEEKHLAGT ETDGTVTGKD EKTIEDASAK 240 LKLEMEEKLR KQEIERLAEG NFLKGNKIFV YPQTVRPDED IEVFFNRSFS TLNDEQDILI 300 MGAFNDWRWR SFTMRLNKTY FKGDWWSCQI HVPKEAYKMD FVFFNGQNIY DNNDKQDFCI 360 IVEGGMDVFA FEDFLLEEKR RELEKLAKEQ AEKERQEEEQ RRIEAEKAAS EADRAQAKVE 420 TGKRREILEQ LMKQAPRSVD NIWFIEPNEF KGADKVKLYY NKTSGPLAHA NELWIHGGHN 480 NWCNGLTIVE KFLRSGREGG DWWYAEVVVP GRALVLDWVF ADGPPKVATI YDNNNYQDFH 540 AVVPKSIPEE MFWVEEEHQI FRKLQAERKL REEAIRAKAE KTARMKAEMK ERTLKRFLLS 600 QKHIVYTEPL DVHAGSTVTV FYNPANTVLN GKHEIWFRCS FNRWTHRMGP LPPQRMLPAD 660 NGSHVKATVK VPLDAYMMDF VFSEREDGGM FDNKGGMDYH IPVFGGIVKE PPMHIVHIAV 720 EMAPIAKVNF GH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart01066 | CBM_25 | 2.0e-16 | 278 | 360 | 84 | + Carbohydrate binding domain. | ||
pfam03423 | CBM_25 | 5.0e-30 | 453 | 544 | 92 | + Carbohydrate binding domain (family 25). | ||
pfam03423 | CBM_25 | 4.0e-31 | 615 | 703 | 89 | + Carbohydrate binding domain (family 25). | ||
pfam03423 | CBM_25 | 3.0e-34 | 278 | 363 | 87 | + Carbohydrate binding domain (family 25). | ||
PLN02316 | PLN02316 | 0 | 94 | 728 | 636 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:2001070 | starch binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF49176.1 | 0 | 1 | 728 | 1 | 730 | starch synthase III [Phaseolus vulgaris] |
EMBL | CAA64173.1 | 0 | 1 | 728 | 1 | 795 | soluble-starch-synthase [Solanum tuberosum] |
RefSeq | XP_002269011.1 | 0 | 1 | 728 | 1 | 707 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305571.1 | 0 | 79 | 728 | 10 | 584 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518476.1 | 0 | 72 | 728 | 1 | 625 | starch synthase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778003 | 504 | 225 | 728 | 0 |
ES833765 | 265 | 427 | 691 | 0 |
HO795466 | 415 | 175 | 578 | 0 |
HO795466 | 307 | 418 | 703 | 2e-20 |
ES833765 | 230 | 266 | 486 | 0.00000000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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