Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G223500.2 |
Family | CBM22 |
Protein Properties | Length: 911 Molecular Weight: 100870 Isoelectric Point: 6.3652 |
Chromosome | Chromosome/Scaffold: 09 Start: 17409511 End: 17413893 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 24 | 162 | 2e-32 |
NIIVNHDFYKGLYSWHPNCCNGFIVSANSGNQVGLSPKSGGNYAVIKNRTEHWQGLEQDITRKISPGSTYSVSACVGVSGPLSGSTDVMATLKLLNHGSG ASYMFIGKTSVSKGKWEMVEGTFSLPTVPNQVIFYLEGP | |||
CBM22 | 197 | 332 | 1.5e-32 |
VIINPQFEDGLSNWSGRGCQVVLHDSMADGKIVPETGKVFASASERTQNWNGIQQEITGRVQRKLAYNVTAVVRIFGNNVTTATVQATLWIHTPDRGEQY IGIGKVQATDKDWVQLQGKFLLNGSPSRVIIYLEGP | |||
CBM22 | 367 | 508 | 6.40393e-43 |
NIITNSQLSDGTNGWFPLGNCNLNAASGSPKILPPMARDSLGVHEPLSGRYILVKNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNVNVAL GVDNQWVNGGQAEIKDGRWHEIGGSFRIEKQPSKVMVYVQGP | |||
GH10 | 564 | 846 | 0 |
VMQTQNSFPIGSCINRTNIENEDFVDFFVKNFNWAVFENELKWYWTEPQRGNFNYKDADDMLALCQNNKIETRGHCIFWEVQSSVQQWIQALNKIDLMKA VQNRLTGLLTRYKGKFRHYDVNNEMLHGSFYKDRLGKDIRTYMFKTANQLDPSATLFVNDYHVEDGRDTRSYPEKYIEQIIDLQLQGAPVGGIGIQGHID NPVGPIVCSALDKLGVLGLPIWFTELDVSSLNEHIRGEDLEVMIREAFAHPAVEGVMLWGFWELFMSRDNAHLVDAEGEINEA |
Full Sequence |
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Protein Sequence Length: 911 Download |
MCDSGTCNWW FLMGNCTSGN PTDNIIVNHD FYKGLYSWHP NCCNGFIVSA NSGNQVGLSP 60 KSGGNYAVIK NRTEHWQGLE QDITRKISPG STYSVSACVG VSGPLSGSTD VMATLKLLNH 120 GSGASYMFIG KTSVSKGKWE MVEGTFSLPT VPNQVIFYLE GPPPGVELLI DSVVIRCPSS 180 SKSESTSIGC SAVGDEVIIN PQFEDGLSNW SGRGCQVVLH DSMADGKIVP ETGKVFASAS 240 ERTQNWNGIQ QEITGRVQRK LAYNVTAVVR IFGNNVTTAT VQATLWIHTP DRGEQYIGIG 300 KVQATDKDWV QLQGKFLLNG SPSRVIIYLE GPPPGTDILV NALSVKHAEK IPPLPPPIIE 360 NPDYGVNIIT NSQLSDGTNG WFPLGNCNLN AASGSPKILP PMARDSLGVH EPLSGRYILV 420 KNRTQTWMGP AQMITDKLKL FLTYQVSAWV RIGSGASGPQ NVNVALGVDN QWVNGGQAEI 480 KDGRWHEIGG SFRIEKQPSK VMVYVQGPAA GVDFMVAGLQ IFPVDRVARF KHLARQTDKT 540 RKRDVILQFS GSESSSLFGT SVTVMQTQNS FPIGSCINRT NIENEDFVDF FVKNFNWAVF 600 ENELKWYWTE PQRGNFNYKD ADDMLALCQN NKIETRGHCI FWEVQSSVQQ WIQALNKIDL 660 MKAVQNRLTG LLTRYKGKFR HYDVNNEMLH GSFYKDRLGK DIRTYMFKTA NQLDPSATLF 720 VNDYHVEDGR DTRSYPEKYI EQIIDLQLQG APVGGIGIQG HIDNPVGPIV CSALDKLGVL 780 GLPIWFTELD VSSLNEHIRG EDLEVMIREA FAHPAVEGVM LWGFWELFMS RDNAHLVDAE 840 GEINEAGKRF LALKHEWLSH SHGRIDIQGQ FEFRGFHGTY VVEVETELNK VSRTFVVDKG 900 DSPLVVSIDL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 7.0e-16 | 196 | 336 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-19 | 24 | 164 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-33 | 592 | 824 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 4.0e-77 | 604 | 850 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 2.0e-77 | 569 | 854 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 17 | 910 | 23 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002301133.1 | 0.000003 | 4 | 175 | 514 | 660 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 17 | 910 | 157 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 23 | 528 | 1 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 195 | 521 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-30 | 573 | 828 | 39 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-30 | 573 | 828 | 39 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-30 | 594 | 823 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-30 | 594 | 823 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 4e-30 | 594 | 823 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 617 | 911 | 0 |
EX570691 | 281 | 617 | 897 | 0 |
DT544203 | 276 | 1 | 252 | 0 |
DT544203 | 265 | 195 | 432 | 4e-17 |
DT544203 | 183 | 367 | 521 | 0.0000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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