Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G223500.3 |
Family | CBM22 |
Protein Properties | Length: 912 Molecular Weight: 100998 Isoelectric Point: 6.4383 |
Chromosome | Chromosome/Scaffold: 09 Start: 17409511 End: 17413684 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 24 | 162 | 2e-32 |
NIIVNHDFYKGLYSWHPNCCNGFIVSANSGNQVGLSPKSGGNYAVIKNRTEHWQGLEQDITRKISPGSTYSVSACVGVSGPLSGSTDVMATLKLLNHGSG ASYMFIGKTSVSKGKWEMVEGTFSLPTVPNQVIFYLEGP | |||
CBM22 | 198 | 333 | 1.5e-32 |
VIINPQFEDGLSNWSGRGCQVVLHDSMADGKIVPETGKVFASASERTQNWNGIQQEITGRVQRKLAYNVTAVVRIFGNNVTTATVQATLWIHTPDRGEQY IGIGKVQATDKDWVQLQGKFLLNGSPSRVIIYLEGP | |||
CBM22 | 368 | 509 | 6.40393e-43 |
NIITNSQLSDGTNGWFPLGNCNLNAASGSPKILPPMARDSLGVHEPLSGRYILVKNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNVNVAL GVDNQWVNGGQAEIKDGRWHEIGGSFRIEKQPSKVMVYVQGP | |||
GH10 | 565 | 847 | 0 |
VMQTQNSFPIGSCINRTNIENEDFVDFFVKNFNWAVFENELKWYWTEPQRGNFNYKDADDMLALCQNNKIETRGHCIFWEVQSSVQQWIQALNKIDLMKA VQNRLTGLLTRYKGKFRHYDVNNEMLHGSFYKDRLGKDIRTYMFKTANQLDPSATLFVNDYHVEDGRDTRSYPEKYIEQIIDLQLQGAPVGGIGIQGHID NPVGPIVCSALDKLGVLGLPIWFTELDVSSLNEHIRGEDLEVMIREAFAHPAVEGVMLWGFWELFMSRDNAHLVDAEGEINEA |
Full Sequence |
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Protein Sequence Length: 912 Download |
MCDSGTCNWW FLMGNCTSGN PTDNIIVNHD FYKGLYSWHP NCCNGFIVSA NSGNQVGLSP 60 KSGGNYAVIK NRTEHWQGLE QDITRKISPG STYSVSACVG VSGPLSGSTD VMATLKLLNH 120 GSGASYMFIG KTSVSKGKWE MVEGTFSLPT VPNQVIFYLE GPPPGVELLI DSVVIRCPSS 180 SKSEKSTSIG CSAVGDEVII NPQFEDGLSN WSGRGCQVVL HDSMADGKIV PETGKVFASA 240 SERTQNWNGI QQEITGRVQR KLAYNVTAVV RIFGNNVTTA TVQATLWIHT PDRGEQYIGI 300 GKVQATDKDW VQLQGKFLLN GSPSRVIIYL EGPPPGTDIL VNALSVKHAE KIPPLPPPII 360 ENPDYGVNII TNSQLSDGTN GWFPLGNCNL NAASGSPKIL PPMARDSLGV HEPLSGRYIL 420 VKNRTQTWMG PAQMITDKLK LFLTYQVSAW VRIGSGASGP QNVNVALGVD NQWVNGGQAE 480 IKDGRWHEIG GSFRIEKQPS KVMVYVQGPA AGVDFMVAGL QIFPVDRVAR FKHLARQTDK 540 TRKRDVILQF SGSESSSLFG TSVTVMQTQN SFPIGSCINR TNIENEDFVD FFVKNFNWAV 600 FENELKWYWT EPQRGNFNYK DADDMLALCQ NNKIETRGHC IFWEVQSSVQ QWIQALNKID 660 LMKAVQNRLT GLLTRYKGKF RHYDVNNEML HGSFYKDRLG KDIRTYMFKT ANQLDPSATL 720 FVNDYHVEDG RDTRSYPEKY IEQIIDLQLQ GAPVGGIGIQ GHIDNPVGPI VCSALDKLGV 780 LGLPIWFTEL DVSSLNEHIR GEDLEVMIRE AFAHPAVEGV MLWGFWELFM SRDNAHLVDA 840 EGEINEAGKR FLALKHEWLS HSHGRIDIQG QFEFRGFHGT YVVEVETELN KVSRTFVVDK 900 GDSPLVVSID L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 6.0e-16 | 197 | 337 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-19 | 24 | 164 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-33 | 593 | 825 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 6.0e-77 | 605 | 851 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 3.0e-77 | 570 | 855 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 17 | 911 | 23 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002301133.1 | 0.000003 | 4 | 175 | 514 | 660 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 17 | 911 | 157 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 23 | 529 | 1 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 196 | 522 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-30 | 574 | 829 | 39 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-30 | 574 | 829 | 39 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 1e-30 | 595 | 824 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 1e-30 | 595 | 824 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 4e-30 | 595 | 824 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 618 | 912 | 0 |
DT544203 | 276 | 1 | 253 | 0 |
EX570691 | 281 | 618 | 898 | 0 |
DT544203 | 265 | 196 | 433 | 4e-17 |
DT544203 | 183 | 368 | 522 | 0.0000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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