Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G223500.6 |
Family | CBM22 |
Protein Properties | Length: 772 Molecular Weight: 85981.6 Isoelectric Point: 6.0546 |
Chromosome | Chromosome/Scaffold: 09 Start: 17409612 End: 17413599 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 58 | 193 | 8.5e-33 |
VIINPQFEDGLSNWSGRGCQVVLHDSMADGKIVPETGKVFASASERTQNWNGIQQEITGRVQRKLAYNVTAVVRIFGNNVTTATVQATLWIHTPDRGEQY IGIGKVQATDKDWVQLQGKFLLNGSPSRVIIYLEGP | |||
CBM22 | 228 | 369 | 3.69943e-43 |
NIITNSQLSDGTNGWFPLGNCNLNAASGSPKILPPMARDSLGVHEPLSGRYILVKNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNVNVAL GVDNQWVNGGQAEIKDGRWHEIGGSFRIEKQPSKVMVYVQGP | |||
GH10 | 425 | 707 | 0 |
VMQTQNSFPIGSCINRTNIENEDFVDFFVKNFNWAVFENELKWYWTEPQRGNFNYKDADDMLALCQNNKIETRGHCIFWEVQSSVQQWIQALNKIDLMKA VQNRLTGLLTRYKGKFRHYDVNNEMLHGSFYKDRLGKDIRTYMFKTANQLDPSATLFVNDYHVEDGRDTRSYPEKYIEQIIDLQLQGAPVGGIGIQGHID NPVGPIVCSALDKLGVLGLPIWFTELDVSSLNEHIRGEDLEVMIREAFAHPAVEGVMLWGFWELFMSRDNAHLVDAEGEINEA |
Full Sequence |
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Protein Sequence Length: 772 Download |
MVEGTFSLPT VPNQVIFYLE GPPPGVELLI DSVVIRCPSS SKSEKSTSIG CSAVGDEVII 60 NPQFEDGLSN WSGRGCQVVL HDSMADGKIV PETGKVFASA SERTQNWNGI QQEITGRVQR 120 KLAYNVTAVV RIFGNNVTTA TVQATLWIHT PDRGEQYIGI GKVQATDKDW VQLQGKFLLN 180 GSPSRVIIYL EGPPPGTDIL VNALSVKHAE KIPPLPPPII ENPDYGVNII TNSQLSDGTN 240 GWFPLGNCNL NAASGSPKIL PPMARDSLGV HEPLSGRYIL VKNRTQTWMG PAQMITDKLK 300 LFLTYQVSAW VRIGSGASGP QNVNVALGVD NQWVNGGQAE IKDGRWHEIG GSFRIEKQPS 360 KVMVYVQGPA AGVDFMVAGL QIFPVDRVAR FKHLARQTDK TRKRDVILQF SGSESSSLFG 420 TSVTVMQTQN SFPIGSCINR TNIENEDFVD FFVKNFNWAV FENELKWYWT EPQRGNFNYK 480 DADDMLALCQ NNKIETRGHC IFWEVQSSVQ QWIQALNKID LMKAVQNRLT GLLTRYKGKF 540 RHYDVNNEML HGSFYKDRLG KDIRTYMFKT ANQLDPSATL FVNDYHVEDG RDTRSYPEKY 600 IEQIIDLQLQ GAPVGGIGIQ GHIDNPVGPI VCSALDKLGV LGLPIWFTEL DVSSLNEHIR 660 GEDLEVMIRE AFAHPAVEGV MLWGFWELFM SRDNAHLVDA EGEINEAGKR FLALKHEWLS 720 HSHGRIDIQG QFEFRGFHGT YVVEVETELN KVSRTFVVDK GDSPLVVSID L* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-15 | 227 | 371 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 2.0e-16 | 57 | 197 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-33 | 453 | 685 | 253 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 1.0e-77 | 465 | 711 | 268 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 4.0e-78 | 430 | 715 | 306 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 2 | 771 | 147 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
GenBank | AAX33301.1 | 3e-31 | 58 | 388 | 31 | 356 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002301133.1 | 9.99995e-41 | 2 | 389 | 117 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 2 | 771 | 281 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 56 | 382 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 6e-31 | 434 | 689 | 39 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 6e-31 | 434 | 689 | 39 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 6e-31 | 455 | 684 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 6e-31 | 455 | 684 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-30 | 455 | 684 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 478 | 772 | 0 |
EX570691 | 281 | 478 | 758 | 0 |
EB442796 | 298 | 255 | 552 | 0 |
EL428755 | 280 | 432 | 711 | 0 |
EB442796 | 116 | 91 | 206 | 0.00000009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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