Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.009G223500.7 |
Family | CBM22 |
Protein Properties | Length: 560 Molecular Weight: 60521.9 Isoelectric Point: 8.2011 |
Chromosome | Chromosome/Scaffold: 09 Start: 17409612 End: 17413599 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 24 | 162 | 6.9e-33 |
NIIVNHDFYKGLYSWHPNCCNGFIVSANSGNQVGLSPKSGGNYAVIKNRTEHWQGLEQDITRKISPGSTYSVSACVGVSGPLSGSTDVMATLKLLNHGSG ASYMFIGKTSVSKGKWEMVEGTFSLPTVPNQVIFYLEGP | |||
CBM22 | 198 | 333 | 5e-33 |
VIINPQFEDGLSNWSGRGCQVVLHDSMADGKIVPETGKVFASASERTQNWNGIQQEITGRVQRKLAYNVTAVVRIFGNNVTTATVQATLWIHTPDRGEQY IGIGKVQATDKDWVQLQGKFLLNGSPSRVIIYLEGP | |||
CBM22 | 368 | 509 | 2.20004e-43 |
NIITNSQLSDGTNGWFPLGNCNLNAASGSPKILPPMARDSLGVHEPLSGRYILVKNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNVNVAL GVDNQWVNGGQAEIKDGRWHEIGGSFRIEKQPSKVMVYVQGP |
Full Sequence |
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Protein Sequence Length: 560 Download |
MCDSGTCNWW FLMGNCTSGN PTDNIIVNHD FYKGLYSWHP NCCNGFIVSA NSGNQVGLSP 60 KSGGNYAVIK NRTEHWQGLE QDITRKISPG STYSVSACVG VSGPLSGSTD VMATLKLLNH 120 GSGASYMFIG KTSVSKGKWE MVEGTFSLPT VPNQVIFYLE GPPPGVELLI DSVVIRCPSS 180 SKSEKSTSIG CSAVGDEVII NPQFEDGLSN WSGRGCQVVL HDSMADGKIV PETGKVFASA 240 SERTQNWNGI QQEITGRVQR KLAYNVTAVV RIFGNNVTTA TVQATLWIHT PDRGEQYIGI 300 GKVQATDKDW VQLQGKFLLN GSPSRVIIYL EGPPPGTDIL VNALSVKHAE KIPPLPPPII 360 ENPDYGVNII TNSQLSDGTN GWFPLGNCNL NAASGSPKIL PPMARDSLGV HEPLSGRYIL 420 VKNRTQTWMG PAQMITDKLK LFLTYQVSAW VRIGSGASGP QNVNVALGVD NQWVNGGQAE 480 IKDGRWHEIG GSFRIEKQPS KVMVYVQGPA AGVDFMVAGL QIFPVDRVAR FKHLARQTDK 540 VISSCNFSSI FFIKSTLTL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 4.0e-15 | 367 | 511 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 7.0e-16 | 197 | 337 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-19 | 24 | 164 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
Gene Ontology | |
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GO Term | Description |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002301133.1 | 0 | 23 | 529 | 1 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 24 | 541 | 164 | 679 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 196 | 522 | 1 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510025.1 | 0.00000003 | 8 | 175 | 369 | 511 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002510025.1 | 0 | 13 | 551 | 8 | 539 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT544203 | 276 | 1 | 253 | 0 |
JG219265 | 255 | 254 | 506 | 0 |
JG219265 | 261 | 83 | 330 | 3e-19 |
DT544203 | 265 | 196 | 433 | 2e-17 |
DT544203 | 183 | 368 | 522 | 0.0000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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