| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.009G334900.1 |
| Family | PL1 |
| Protein Properties | Length: 314 Molecular Weight: 34717.6 Isoelectric Point: 8.4109 |
| Chromosome | Chromosome/Scaffold: 09 Start: 35415646 End: 35416832 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 91 | 208 | 3.2e-22 |
| IIFKGSMTIKLEQELNVTSDETIDARGGNVKICTGAGITIQFPKNVIIHGHQVHLIIPAKGGKIKDGENHHGLRGDSDGDGVSLFGATNVWLDHLSLHHC TDGLIDVKMQVTVALNHF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 314 Download |
| MLEFYITKRV LAESKKGPFE VTIHVDSCWR CDLDWEKNRK KLADCAPGFA RGTTGGKDGD 60 FYVVTDPINN TVDPKPRTLR HPVTQNGPLW IIFKGSMTIK LEQELNVTSD ETIDARGGNV 120 KICTGAGITI QFPKNVIIHG HQVHLIIPAK GGKIKDGENH HGLRGDSDGD GVSLFGATNV 180 WLDHLSLHHC TDGLIDVKMQ VTVALNHFGK GLVERMPRCR FGFIHVVNND YNHWFLYAIG 240 GTSNPTIISQ GNSWNWVSQG DHFENGAFFT PSSNPSASKQ FGTNKMIPFK PGQMVFELRK 300 YAGPLSCTIS RPC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-12 | 52 | 252 | 253 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-35 | 92 | 253 | 203 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-39 | 97 | 252 | 200 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79927.1 | 0 | 7 | 313 | 74 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 7 | 313 | 103 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282500.1 | 0 | 7 | 313 | 6 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311599.1 | 0 | 1 | 313 | 57 | 429 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520133.1 | 0 | 7 | 313 | 75 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 25 | 306 | 4 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 25 | 306 | 4 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000008 | 42 | 245 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.0005 | 100 | 254 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 3krg_A | 0.003 | 160 | 252 | 221 | 323 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| CO119489 | 211 | 1 | 208 | 0 |
| CO115213 | 274 | 15 | 255 | 0 |
| CO100993 | 268 | 20 | 254 | 0 |
| CO127299 | 180 | 1 | 180 | 0 |
| CO120431 | 174 | 1 | 174 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Gossypium raimondii | Gorai.009G335100.1 | Gorai.009G335000.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |