PlantCAZyme

Basic Information
Species	Gossypium raimondii
Cazyme ID	Gorai.009G335000.1
Family	PL1
Protein Properties	Length: 367 Molecular Weight: 41026.8 Isoelectric Point: 8.8311
Chromosome	Chromosome/Scaffold: 09 Start: 35428089 End: 35429460
Description	Pectate lyase family protein
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
PL1	137	278	3.1e-25
ITFKTSMTIKLEQELIVTSDKTIDARGANVEICNGAGITIQFAKNVIIYGLQIHQIFPAKGGKIKDGENYHGLRGASDRDGLDHLSLHHCANGLIDFIQG STVVTISNCHFTHNNDRATLTLSHFGKGLVERMPRCRFSCIH

Full Sequence
Protein Sequence Length: 367 Download
MGISSYSYGF FLLLIVVTIP TLEAHIAKYD EYWKARELED IENLDKAYHS NLEEVDRHYN 60 DHFSRTMIEF YNTKRLLAES KKGPFEKLTY YTPRFARGTT GGKGGEFYAV IDPIDNAADP 120 KPRTLRHAIT QTGPPWITFK TSMTIKLEQE LIVTSDKTID ARGANVEICN GAGITIQFAK 180 NVIIYGLQIH QIFPAKGGKI KDGENYHGLR GASDRDGLDH LSLHHCANGL IDFIQGSTVV 240 TISNCHFTHN NDRATLTLSH FGKGLVERMP RCRFSCIHGN RYSALGTFGA KEVTCRGLLK 300 PAQWKNWNWV SQGDHFENGA FFMPSGNPSA NKQFGADKMM PFKPGQMVPK PTKYAGPLNC 360 IIGRPC*

Full Sequence

Protein Sequence Length: 367 Download

MGISSYSYGF FLLLIVVTIP TLEAHIAKYD EYWKARELED IENLDKAYHS NLEEVDRHYN    60
DHFSRTMIEF YNTKRLLAES KKGPFEKLTY YTPRFARGTT GGKGGEFYAV IDPIDNAADP    120
KPRTLRHAIT QTGPPWITFK TSMTIKLEQE LIVTSDKTID ARGANVEICN GAGITIQFAK    180
NVIIYGLQIH QIFPAKGGKI KDGENYHGLR GASDRDGLDH LSLHHCANGL IDFIQGSTVV    240
TISNCHFTHN NDRATLTLSH FGKGLVERMP RCRFSCIHGN RYSALGTFGA KEVTCRGLLK    300
PAQWKNWNWV SQGDHFENGA FFMPSGNPSA NKQFGADKMM PFKPGQMVPK PTKYAGPLNC    360
IIGRPC* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
pfam04431	Pec_lyase_N	2.0e-7	25	75	51	+ Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes.
COG3866	PelB	1.0e-13	98	289	230	+ Pectate lyase [Carbohydrate transport and metabolism]
pfam00544	Pec_lyase_C	3.0e-19	149	278	178	+ Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656	Amb_all	8.0e-23	143	278	163	+ Amb_all domain.

Gene Ontology
GO Term	Description
GO:0030570	pectate lyase activity

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
EMBL	CAN79927.1	0	17	366	19	439	hypothetical protein [Vitis vinifera]
EMBL	CBI22159.1	0	17	366	48	468	unnamed protein product [Vitis vinifera]
RefSeq	XP_002270089.1	0	16	366	18	443	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002270112.1	0	20	366	22	443	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002520133.1	0	1	366	4	440	Pectate lyase precursor, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1pxz_B	3e-40	87	356	20	343	A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen
PDB	1pxz_A	3e-40	87	356	20	343	A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen
PDB	3zsc_A	0.000001	92	286	14	216	A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima

Transmembrane Domains

Start	End
5	27

Signal Peptide

Cleavage Site
24

EST Download unfiltered results here

Hit	Length	Start	End	EValue
CO119489	253	30	252	0
CO120431	238	1	218	0
CO127299	237	2	218	0
CO102661	237	2	218	0
CO120015	228	1	208	0

Orthologous Group
Species	ID
Gossypium raimondii	Gorai.009G335100.1	Gorai.009G334900.1

CAZyme Information