Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G029100.1 |
Family | CBM22 |
Protein Properties | Length: 932 Molecular Weight: 102613 Isoelectric Point: 6.6333 |
Chromosome | Chromosome/Scaffold: 10 Start: 2409163 End: 2413663 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 45 | 185 | 1.2e-30 |
NIIVNHDFSNGLHSWHTNCCNGFVVSAECGGRGKPLSSSRSSGNYAVVTNRTKCWQGLEQDITSRVLPGSTYSVSACVGVSGPLSGSTDVLATLKLENHG SATSYMLIGKTSMSKEKWEIVEGTFLLLAVPERLVFYLEGP | |||
CBM22 | 217 | 353 | 1e-33 |
NIIINPKFEDGLNNWSGRGCKVALHDSMADGKIVPQSGKAFASATERTQNWNGIQQEITGRVQRKLAYSVAAVVRIFGNNVTAATVQATLWVQTPGRNDQ YVGIANVQATDKDWVQLQGKFLLNGSPSKVVIYLEGP | |||
CBM22 | 388 | 529 | 1.4013e-43 |
NIITNSQLDDSTNGWFPLGNCNLSVGSGSPHILPPMARASLGVHEPLSGRYIHVKNRTQTWMGPAQMITDKVKLFLTYQVSAWVRIGSGANGPQNVNVAL GVDNQWVNGGQVEINDDRWHEIGGSFRIEKQPSKVMVYIQGP | |||
GH10 | 585 | 855 | 0 |
VVQTQNSFPIGSCMSRTNIDNEDFINFFVKNFNWAVFGNELKWYWTEPQQGNLNYKDADDMVALCQKHNIETRGHCIFWEVQATVQQWIQALNKDDLMKA VQNRLTDLLTRYKGKFKHYDVNNEMLHGSYYQDRLGKDIRANMFKTANQLDPSATLFVNDYHIEDGCDTRSCPERYIEHILDLQEQGAPVGGIGIQGHID NPVGPVVCTALDKLGILGLPIWFTELDVSSINEHVRGEDLEVMLREAFAHPAVEGVMLWGFWELFMSRDNA |
Full Sequence |
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Protein Sequence Length: 932 Download |
MKGLPICCFI SRQHKHPSKR SEETMENPQL MSNSGCSENL NQAANIIVNH DFSNGLHSWH 60 TNCCNGFVVS AECGGRGKPL SSSRSSGNYA VVTNRTKCWQ GLEQDITSRV LPGSTYSVSA 120 CVGVSGPLSG STDVLATLKL ENHGSATSYM LIGKTSMSKE KWEIVEGTFL LLAVPERLVF 180 YLEGPSPGVD LLIDSVVISC PSSSESESAS IGAGDDNIII NPKFEDGLNN WSGRGCKVAL 240 HDSMADGKIV PQSGKAFASA TERTQNWNGI QQEITGRVQR KLAYSVAAVV RIFGNNVTAA 300 TVQATLWVQT PGRNDQYVGI ANVQATDKDW VQLQGKFLLN GSPSKVVIYL EGPPPGTDLL 360 VNSLVVKHAE KTPPSPAPVI ENPDFGVNII TNSQLDDSTN GWFPLGNCNL SVGSGSPHIL 420 PPMARASLGV HEPLSGRYIH VKNRTQTWMG PAQMITDKVK LFLTYQVSAW VRIGSGANGP 480 QNVNVALGVD NQWVNGGQVE INDDRWHEIG GSFRIEKQPS KVMVYIQGPG AGVDLMVAGV 540 QIFPVNREAR FKYLRHQADK IRKRDIVLKF SGAGSSSLSG TNVKVVQTQN SFPIGSCMSR 600 TNIDNEDFIN FFVKNFNWAV FGNELKWYWT EPQQGNLNYK DADDMVALCQ KHNIETRGHC 660 IFWEVQATVQ QWIQALNKDD LMKAVQNRLT DLLTRYKGKF KHYDVNNEML HGSYYQDRLG 720 KDIRANMFKT ANQLDPSATL FVNDYHIEDG CDTRSCPERY IEHILDLQEQ GAPVGGIGIQ 780 GHIDNPVGPV VCTALDKLGI LGLPIWFTEL DVSSINEHVR GEDLEVMLRE AFAHPAVEGV 840 MLWGFWELFM SRDNAHLVNA EGDVNETGKR FLALKHEWLS HARGQVDVQG QFNFRGFHGK 900 YAVEIDTPSK KIVKTFVVDK GDTPLVVPVE L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-16 | 217 | 357 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-16 | 44 | 187 | 146 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-34 | 560 | 845 | 308 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-78 | 590 | 875 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-81 | 625 | 871 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 11 | 931 | 3 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 9 | 931 | 68 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 43 | 931 | 162 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 45 | 537 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 216 | 542 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-29 | 577 | 849 | 22 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-29 | 577 | 849 | 22 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1ur2_A | 3e-28 | 572 | 815 | 16 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1ur1_A | 3e-28 | 572 | 815 | 16 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1uqz_A | 3e-28 | 572 | 815 | 16 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 638 | 932 | 0 |
EX570691 | 281 | 638 | 918 | 0 |
HO789518 | 281 | 631 | 911 | 0 |
EB442796 | 298 | 415 | 712 | 0 |
EB442796 | 116 | 251 | 366 | 0.000000007 |
Sequence Alignments (This image is cropped. Click for full image.) |
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