Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G013800.4 |
Family | CBM53 |
Protein Properties | Length: 1076 Molecular Weight: 122580 Isoelectric Point: 5.9643 |
Chromosome | Chromosome/Scaffold: 11 Start: 976559 End: 982911 |
Description | starch synthase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 192 | 274 | 8.7e-32 |
EIEVFFNRSLSNLKNEPDVLIMGSFNDWRWRSFTVRLNKTHLKGDWWSCLIRVPKEAYKMDFVFFNGQNVYENNDKNDFCITV | |||
CBM53 | 528 | 615 | 1.7e-32 |
SMVTIFYNPANTVLNGKPEVWFRCSFNRWTHSMGPLPPQRMLPVDNGFHVKATVKVPLDAYMMDFVFSEREDGGIFDNNGGTDYHIRV | |||
CBM53 | 366 | 455 | 5.8e-35 |
EKVRLYYNKSSSHLTHANELWIHGGHNNWNDGLTIAEKLVKSEKEGGDWWYAEVVIPDGALVLDWVFANGPPKAATIYDNNNRQDFHAIV | |||
GT5 | 626 | 1070 | 0 |
HVVHIAVEMAPIAKVGGLGDIVTSLSRAVQDLNHNVNIVFPKYDCLKFEHVTDFHYQRCYSWGGTEIEVWFGKVEGLSVYFLDPQNGFFSTGCVYGRGND AQRFGFFCHAALEFLHQSGFHPDIIHCHDWSSAPVAWLLKDHYMHYDGLSKSRVVFTIHNLEFGAHFIAKAMVYADKATTVSHTYSKEVAGNPAIAPHLH KFHGILNGIDLDIWDPFNDKFIPVSYNSENVIEGKQAAKKALQQRLGLKKSDLPLVGIISRLTHQKGIHLIKHAISRTLELNGQVVLLGSAPDPRIQNDF VNLANQLHSSHADRARLCLNYDEPLSHLIYAGSDFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDNDKARAEAQGLEPNGFNFDGADGSG VDYALNRAITAWYGARDWFNSLCKTVMEQDWSWNRPALEYIELYH |
Full Sequence |
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Protein Sequence Length: 1076 Download |
MSTQKRKQQK NNEQKEDSSI PKLSEFVEPN NREIELKVDE VENKEEKEDL SSIGKELDIR 60 LSNHNVVNGN GNGMILGDVV GLEKKEISSE NGTASIGLEK KEIGSENGTV STLRDVVSEG 120 KHIDDTKTGE IVTVEVESVE VDEKTVQDKS LQLKLEMETN LRKQEIEGLA DENFLRGDKF 180 FVYPQIIKPD GEIEVFFNRS LSNLKNEPDV LIMGSFNDWR WRSFTVRLNK THLKGDWWSC 240 LIRVPKEAYK MDFVFFNGQN VYENNDKNDF CITVEGGIDV FAFEDILVEE KRMELEKIAK 300 EQAEKERQEE EQRRIGVEKA ASEAERAQAR IEIERRREIL QQLMKKAAQS FDNIWFIEPK 360 EFKGAEKVRL YYNKSSSHLT HANELWIHGG HNNWNDGLTI AEKLVKSEKE GGDWWYAEVV 420 IPDGALVLDW VFANGPPKAA TIYDNNNRQD FHAIVQKSIP EEQFWVEEEH RIFEKLQKDR 480 KLREEAIHAK AEKTTQMKGE MKERTLKRFL LSQKNVVYTE PLDIHAGSMV TIFYNPANTV 540 LNGKPEVWFR CSFNRWTHSM GPLPPQRMLP VDNGFHVKAT VKVPLDAYMM DFVFSEREDG 600 GIFDNNGGTD YHIRVVGGIV KEPPMHVVHI AVEMAPIAKV GGLGDIVTSL SRAVQDLNHN 660 VNIVFPKYDC LKFEHVTDFH YQRCYSWGGT EIEVWFGKVE GLSVYFLDPQ NGFFSTGCVY 720 GRGNDAQRFG FFCHAALEFL HQSGFHPDII HCHDWSSAPV AWLLKDHYMH YDGLSKSRVV 780 FTIHNLEFGA HFIAKAMVYA DKATTVSHTY SKEVAGNPAI APHLHKFHGI LNGIDLDIWD 840 PFNDKFIPVS YNSENVIEGK QAAKKALQQR LGLKKSDLPL VGIISRLTHQ KGIHLIKHAI 900 SRTLELNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHADRA RLCLNYDEPL SHLIYAGSDF 960 ILVPSIFEPC GLTQLTAMRY GSIPVVRKTG GLYDTVFDVD NDKARAEAQG LEPNGFNFDG 1020 ADGSGVDYAL NRAITAWYGA RDWFNSLCKT VMEQDWSWNR PALEYIELYH ATKKY* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02939 | PLN02939 | 7.0e-140 | 625 | 1069 | 491 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 8.0e-155 | 625 | 1070 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 8.0e-167 | 625 | 1070 | 487 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-176 | 626 | 1070 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02316 | PLN02316 | 0 | 147 | 1074 | 929 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
GO:2001070 | starch binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACT09059.1 | 0 | 148 | 1074 | 303 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
DDBJ | BAF49176.1 | 0 | 25 | 1074 | 126 | 1163 | starch synthase III [Phaseolus vulgaris] |
RefSeq | XP_002269011.1 | 0 | 2 | 1074 | 57 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305571.1 | 0 | 92 | 1074 | 21 | 1017 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518476.1 | 0 | 2 | 1074 | 23 | 1058 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 625 | 1073 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 625 | 1073 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 625 | 1073 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 625 | 1073 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 625 | 1073 | 1 | 477 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778003 | 715 | 147 | 861 | 0 |
HO794758 | 568 | 507 | 1074 | 0 |
ES819035 | 292 | 632 | 923 | 0 |
HO794758 | 107 | 181 | 278 | 0.00009 |
HO794758 | 124 | 341 | 462 | 0.071 |
Sequence Alignments (This image is cropped. Click for full image.) |
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