Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.011G082400.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 43410.1 Isoelectric Point: 7.602 |
Chromosome | Chromosome/Scaffold: 11 Start: 8311885 End: 8314398 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 387 | 0 |
DTCSEAASSATLVIPKGKQFLVHPLIFTGPCKSGAINVMLSGTILAPNGPDQWNASDLSTWLAFEGVTGLSISGFGTIDGRGKGWWDRSCRYHPGQGCFT LAPTALRFQNCNNLKMLNTNFHNSPQTHVLLLGCQNVELGFLNIQSPGTSPNTDGIHIQFGRNVSIHNSQIADGDDCISIGDKTYDVKINDIKCGPGHGV SIGSLGRDGEVVQVNNIKVKRVSFHGTTNGVRIKTWQTGRGLVQNVTFTNINFTAVENPIIIDQYYCDKPDSCKPTDTGVHINDVRYSKLIGTSQTEVAI NLNCSNNVPCTGITLDNVRLVSATHQFNQLVSSCNHVS |
Full Sequence |
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Protein Sequence Length: 403 Download |
MDSLSISYAF YVVSLLTICI SAKEFNVLSY GASGNGITDD SLAFMKAWKD TCSEAASSAT 60 LVIPKGKQFL VHPLIFTGPC KSGAINVMLS GTILAPNGPD QWNASDLSTW LAFEGVTGLS 120 ISGFGTIDGR GKGWWDRSCR YHPGQGCFTL APTALRFQNC NNLKMLNTNF HNSPQTHVLL 180 LGCQNVELGF LNIQSPGTSP NTDGIHIQFG RNVSIHNSQI ADGDDCISIG DKTYDVKIND 240 IKCGPGHGVS IGSLGRDGEV VQVNNIKVKR VSFHGTTNGV RIKTWQTGRG LVQNVTFTNI 300 NFTAVENPII IDQYYCDKPD SCKPTDTGVH INDVRYSKLI GTSQTEVAIN LNCSNNVPCT 360 GITLDNVRLV SATHQFNQLV SSCNHVSGLN RGIIEPKSCL KN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-90 | 25 | 399 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 4.0e-93 | 15 | 401 | 391 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-95 | 20 | 402 | 383 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-100 | 26 | 397 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-115 | 21 | 400 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 28 | 400 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
DDBJ | BAC57279.1 | 0 | 25 | 399 | 53 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 25 | 399 | 53 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002517618.1 | 0 | 15 | 373 | 1 | 351 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 152 | 376 | 470 | 699 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-27 | 121 | 371 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-16 | 21 | 369 | 17 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000000002 | 86 | 347 | 20 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000002 | 86 | 347 | 20 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000002 | 86 | 347 | 20 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES829659 | 174 | 228 | 401 | 0 |
DT769246 | 260 | 146 | 396 | 0 |
DT769247 | 272 | 6 | 273 | 0 |
DT746124 | 246 | 160 | 396 | 0 |
ES829659 | 24 | 206 | 229 | 0.46 |
Sequence Alignments (This image is cropped. Click for full image.) |
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