y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os06g05209.1 |
Family | PL1 |
Protein Properties | Length: 451 Molecular Weight: 50315.9 Isoelectric Point: 8.3377 |
Chromosome | Chromosome/Scaffold: 6 Start: 2336429 End: 2338189 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 174 | 369 | 0 |
WIVFARDMIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIHNVHIHHSVPHGGGMIRDSKRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNC SDGLIDAVSGSTAITISNGHFTKHDHVMLFGASNSDAQDEVMQITVAFNHFGKGLVPRCRFGFFHVVNNDYTHWLMYAIGGNMNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 451 Download |
MDIYTTSHHS TIMAASSVTG SRRLCILFYL LTVVATVVTA ASAHTAHNAT ADEEYWEKRA 60 EEARSFNRAA YVSDPVATLN RFNADVLRAT TRRSLARYTG PCMATNPIDR CWRCRDDWAT 120 DRKRLARCVR GFGHRTVGGA AGKIYVVTDA SDDEMVIPRK GTLRYGVIQD RPMWIVFARD 180 MIIQLRQELI VNHNKTIDGR GAQVHITGAQ ITLQGVQHVI IHNVHIHHSV PHGGGMIRDS 240 KRHYGLRTRS DGDGISIMSS SNIWIDHVSM SNCSDGLIDA VSGSTAITIS NGHFTKHDHV 300 MLFGASNSDA QDEVMQITVA FNHFGKGLVP RCRFGFFHVV NNDYTHWLMY AIGGNMNPTI 360 ISQGNRFIAP DDLNAKEVTK REYTPYDEYK EWVWKSQGDV MMNGAFFNES GGQNERSYDQ 420 LDFIPAKHGK YVGQLTKFAG TLNCHVGMPC * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-16 | 52 | 95 | 50 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-19 | 136 | 367 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-47 | 187 | 367 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-58 | 180 | 371 | 205 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA16476.1 | 0 | 15 | 450 | 2 | 438 | pectate lyase homolog [Zea mays] |
DDBJ | BAD68402.1 | 0 | 13 | 450 | 1 | 438 | putative pectate lyase homolog [Oryza sativa Japonica Group] |
GenBank | EAY99626.1 | 0 | 13 | 450 | 1 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
RefSeq | NP_001056781.1 | 0 | 1 | 450 | 1 | 450 | Os06g0144200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056786.1 | 0 | 103 | 450 | 1 | 348 | Os06g0145100 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 106 | 442 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 106 | 442 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-20 | 136 | 358 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 3e-16 | 184 | 405 | 71 | 312 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1pe9_B | 0.000000000002 | 136 | 411 | 24 | 325 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |