Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023542 |
Family | PL1 |
Protein Properties | Length: 493 Molecular Weight: 53111.3 Isoelectric Point: 6.1498 |
Chromosome | Chromosome/Scaffold: 1216 Start: 722073 End: 726315 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 141 | 346 | 0 |
IIFAADMTISLKHELIFNSYKTVDGRGANVHITGNGCLTLQYGCLTLQYVNHVIIHNVRIYDCKPSGNTNVASSPTHVGFRGRSDGDGISLFGAHNVWID HCTLSSCTDGLIDAIMGSTGITISNNFFSRHNEVMLMGHDDRFVLDRGMQVTIAFNRFGEELVQRMPRCRHGYIHVVNNDFTYWKMYAIGGSASPTINSQ GNRYVA |
Full Sequence |
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Protein Sequence Length: 493 Download |
MAAASSRMLP ISFCILFLSS ILNSVADSKF INLTLPHQHP YPDDVANDVH RRVNQSLSRR 60 LLQAGSTCQT GNPIDDCWRC DPNWLNNRQH LADCSIGFGH GALGGRGGQI YVVTDSSDHD 120 PSSPTPGTLR YGVIQDVPLW IIFAADMTIS LKHELIFNSY KTVDGRGANV HITGNGCLTL 180 QYGCLTLQYV NHVIIHNVRI YDCKPSGNTN VASSPTHVGF RGRSDGDGIS LFGAHNVWID 240 HCTLSSCTDG LIDAIMGSTG ITISNNFFSR HNEVMLMGHD DRFVLDRGMQ VTIAFNRFGE 300 ELVQRMPRCR HGYIHVVNND FTYWKMYAIG GSASPTINSQ GNRYVAPVDP DAKEVTKRVE 360 TDEKEWERWN WRTDGDIMVN GAFFVPSGAG VSAMYERATS LNAMSAALVE QLTSNAGVLG 420 GTRDTGGMPS NPGFNGGGAG GTTYTGSYGS PGGDGSSGGD GNVFGMIFGS GAADAAAVPT 480 SSVWEIEYWA NN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.003 | 167 | 273 | 107 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 3.0e-22 | 159 | 342 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-62 | 142 | 344 | 211 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-72 | 146 | 347 | 213 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 32 | 427 | 24 | 413 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 10 | 486 | 14 | 502 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 31 | 476 | 26 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 13 | 423 | 9 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 8 | 473 | 1 | 461 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 419 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 419 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jta_A | 7e-16 | 233 | 417 | 151 | 357 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1jrg_B | 7e-16 | 233 | 417 | 151 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
PDB | 1jrg_A | 7e-16 | 233 | 417 | 151 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |