| Basic Information | |
|---|---|
| Species | Picea abies |
| Cazyme ID | MA_101092g0010 |
| Family | PL1 |
| Protein Properties | Length: 482 Molecular Weight: 54472 Isoelectric Point: 7.4375 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 387 | 481 | 2.4e-28 |
| MGGSDEDSISVLASRDIWIDHNSLYTSTDGLIDVTLASKAITISNNRFSHHDDVMRLGHDDSYSADNAMKVTVAFNDFRLGCGRHMPRFCFGYVH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 482 Download |
| MAPPVGIPCV DILLVVRLPP NSSDLTSSAD TDSLAIARLS VKPLLVSETS FVVVGTLSVG 60 VVYKILEFLD TYKKEYKLSF VPIILCRDWN GTKWGHVYKF LRSQGFVSSY DTSHHYKDSD 120 VDAHKWISHR NHRGNICGVD FIWLLNPNNW RKPLKASWNE AVFGITKSKL NEAGLKDRDA 180 FCFFKSDKCC DNHVTFPEFK GSLQQLMRSY HKELCFDGLN IKEIEDLFGV ADTDKNGIID 240 YEKFQRMLLP LGQSVGTWNW SASHCTENND HKVLSEKPNY ISSTIELNDM FAGESIAPLM 300 LFGLGTKLQD LKNLQGATIG FHVKKSFFIF PENGARGNVK LQRRKLRNIF YILSQDHGKH 360 SPEELQRVLV LCQFGSLNWY GSLVQSMGGS DEDSISVLAS RDIWIDHNSL YTSTDGLIDV 420 TLASKAITIS NNRFSHHDDV MRLGHDDSYS ADNAMKVTVA FNDFRLGCGR HMPRFCFGYV 480 HG |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00051 | EFh | 5.0e-5 | 178 | 248 | 71 | + EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers. | ||
| COG3866 | PelB | 4.0e-13 | 393 | 481 | 99 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-27 | 388 | 481 | 102 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-27 | 388 | 481 | 103 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB47029.2 | 0 | 62 | 302 | 39 | 263 | endonuclease/exonuclease/phosphatase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABR16038.1 | 0 | 62 | 337 | 293 | 575 | unknown [Picea sitchensis] |
| EMBL | CBI38741.1 | 0 | 62 | 269 | 228 | 421 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001064303.1 | 0 | 62 | 302 | 207 | 431 | Os10g0203000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002268930.1 | 0 | 62 | 269 | 174 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3e-24 | 384 | 481 | 142 | 239 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3e-24 | 384 | 481 | 142 | 239 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.000000006 | 390 | 481 | 187 | 295 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000002 | 391 | 481 | 115 | 207 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00002 | 393 | 481 | 134 | 240 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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