y
Basic Information | |
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Species | Picea abies |
Cazyme ID | MA_20455g0010 |
Family | PL1 |
Protein Properties | Length: 517 Molecular Weight: 57386.1 Isoelectric Point: 6.9702 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 248 | 423 | 0 |
ITFAHDMVITLKEPLWIGSNTTVDGRGANVSIREKGIVMSSVHNIILHNFQVGDVAESDTVHIYKGVTKVWVDHLTSFNGKLGLVTVIQGSTDVTISNSL LSNTNFNMLLGASDMDTVDHKLRVTVYRNWFKDSTQRMPHCRWGYCHVVNNVYSNWGYYAIGGRAHAKIYSESNVF |
Full Sequence |
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Protein Sequence Length: 517 Download |
MDCSFRSVVF LHFFMGFYLL LLHAVVVTAG DGDYPVGYNN SRTAENLMSE ISESLLRFED 60 FLRKASVLND TITSLSSGQC EQAVNAALTS MPWLHALVLN HSYSDAITQL GHFKDILSSC 120 SELNIVDSIG FSEAMLDFTH QASEDIEKAY RILEDLGDLR KRTEIFQQSG NKFDVIKARS 180 KCEADGSKCQ FSRCGAGKML AKCAVGFAGG VSGGAEGELY MVTSSEDNPR DSPPGTLRYA 240 LTKNPVWITF AHDMVITLKE PLWIGSNTTV DGRGANVSIR EKGIVMSSVH NIILHNFQVG 300 DVAESDTVHI YKGVTKVWVD HLTSFNGKLG LVTVIQGSTD VTISNSLLSN TNFNMLLGAS 360 DMDTVDHKLR VTVYRNWFKD STQRMPHCRW GYCHVVNNVY SNWGYYAIGG RAHAKIYSES 420 NVFFPGQKRL EITPWYTGSD STTFDTTPTI QSRNDLFLNG AIFHQFLRFG TLNPPRYAPA 480 TYYPPIIPTA KLAALVQDCS GALFGRRLRL CLHSARD 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-29 | 238 | 444 | 228 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-40 | 265 | 423 | 181 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-51 | 253 | 423 | 187 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_200383.1 | 0 | 180 | 478 | 42 | 361 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_001753505.1 | 0 | 197 | 511 | 2 | 324 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001761530.1 | 0 | 189 | 511 | 1 | 330 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002282500.1 | 0 | 181 | 486 | 29 | 345 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002522747.1 | 0 | 198 | 511 | 66 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 200 | 463 | 21 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 200 | 463 | 21 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 0.000000000000006 | 262 | 423 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 0.0000000000002 | 200 | 423 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000002 | 207 | 423 | 44 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
Transmembrane Domains | |||||
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Start | End | ||||
7 | 29 |
Signal Peptide | |||||
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Cleavage Site | |||||
0 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC950609 | 218 | 298 | 511 | 0 |
BJ867600 | 215 | 287 | 501 | 0 |
BJ867266 | 182 | 286 | 467 | 0 |
JG594056 | 167 | 227 | 388 | 0 |
HO592271 | 143 | 326 | 466 | 0 |
Orthologous Group | |||||
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Species | ID | ||||
Physcomitrella patens | Pp1s9_110V6.1 | ||||
Selaginella moellendorffii | 115361 | 92002 | 13606 | 13694 |
Sequence Alignments (This image is cropped. Click for full image.) |
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