| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000158507 |
| Family | CBM13 |
| Protein Properties | Length: 455 Molecular Weight: 50993.1 Isoelectric Point: 6.1725 |
| Chromosome | Chromosome/Scaffold: 001580126 Start: 5147 End: 6793 |
| Description | |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM13 | 337 | 451 | 5.8e-22 |
| GYNDMCLTANDDKSRVWMEYCVPSKNQQQWALYSEGTIRVNSDRTLCVTSNGHNSSNVIIILKCELKRGDQRWVFKTDGSILNPNAELVMDVKNSDVYLR QIILYPYYGTPNQQW | |||
| CBM13 | 198 | 326 | 1.5e-24 |
| VQNRTTHISGLEGLCVDVKNGLDSDGNLVQIWPCGQQRNQKWTFQPDETIRSMEKCMTAYSTSSPENYVMIYNCTTAVXEATKWALSTDGTITHRRSGLV LTAHEATRGTTLTIATNSHSPKQGWRVAD | |||
| Full Sequence |
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| Protein Sequence Length: 455 Download |
| MTRVLAIYIT LAFSLFLCGT ECNISFSTSG ATSNSYNTNY XDLEKAAEKS RDKIPLGLTP 60 LHNAITSLWN XESEEAAVSL LVIIQTVFEA ARFRVIEQRV RNSISSKANF IPDPAMLSLE 120 NNWLAISWET QHALNGVFSK SIQLRSTNNN LFLVDSVSSS IMAGVAFLFY NCVTFPNIIK 180 MPVNVVMGKE IDNEICAVQN RTTHISGLEG LCVDVKNGLD SDGNLVQIWP CGQQRNQKWT 240 FQPDETIRSM EKCMTAYSTS SPENYVMIYN CTTAVXEATK WALSTDGTIT HRRSGLVLTA 300 HEATRGTTLT IATNSHSPKQ GWRVADDVEP TVTSIIGYND MCLTANDDKS RVWMEYCVPS 360 KNQQQWALYS EGTIRVNSDR TLCVTSNGHN SSNVIIILKC ELKRGDQRWV FKTDGSILNP 420 NAELVMDVKN SDVYLRQIIL YPYYGTPNQQ WLPFF 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00161 | RICIN | 2.0e-5 | 372 | 451 | 81 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 1.0e-6 | 287 | 411 | 130 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 2.0e-21 | 204 | 322 | 123 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| cd00161 | RICIN | 7.0e-27 | 335 | 452 | 120 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00161 | RIP | 1.0e-30 | 20 | 133 | 118 | + Ribosome inactivating protein. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0017148 | negative regulation of translation |
| GO:0030598 | rRNA N-glycosylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC15886.1 | 0 | 36 | 452 | 137 | 557 | ribosome inactivating protein precursor [Sambucus nigra] |
| GenBank | AAF37219.1 | 0 | 35 | 452 | 150 | 591 | AF213984_1 ribosome inactivating protein RIPt [Polygonatum multiflorum] |
| GenBank | AAL04123.1 | 0 | 35 | 452 | 136 | 557 | AF409135_1 ribosome-inactivating protein [Sambucus nigra] |
| GenBank | AAN05009.1 | 0 | 35 | 452 | 151 | 578 | ribosome-inactivating protein [Binary vector pGV4945] |
| GenBank | AAN86130.1 | 0 | 35 | 452 | 136 | 557 | AF249280_1 type 2 ribosome-inactivating protein Nigrin l precursor [Sambucus nigra] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vlc_B | 0 | 36 | 455 | 133 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 2vlc_A | 0 | 36 | 455 | 133 | 570 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3cah_A | 0 | 202 | 452 | 4 | 252 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3ca6_A | 0 | 202 | 452 | 4 | 252 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| PDB | 3ca5_A | 0 | 202 | 452 | 4 | 252 | A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii) |
| Signal Peptide | ||||
|---|---|---|---|---|
| Cleavage Site | ||||
| 22 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO504583 | 214 | 238 | 451 | 0 |
| CN948289 | 215 | 85 | 299 | 0 |
| EB132449 | 169 | 104 | 272 | 0 |
| EL931393 | 245 | 202 | 442 | 0 |
| JG702939 | 266 | 192 | 455 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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