| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000176803 |
| Family | PL4 |
| Protein Properties | Length: 1239 Molecular Weight: 141542 Isoelectric Point: 4.9619 |
| Chromosome | Chromosome/Scaffold: 00671668 Start: 5888 End: 17379 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| PL4 | 1 | 562 | 0 |
| MDNGILQVTLSNPDGIVTGIRYNGIDNLLEPLNKETNRGYWDLVWSAPGSKGIFDVIKGTTFKVIVESEEQVELSFSKTWDCSLEGKYVPLNIYKRFVML RGSSGFYSYGIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVSDNRQRYMPLPDDRLSEQCQALAYPEAVLLVDPKMKDLAGEXDDKYQYSCDSQDNKVH GWICTNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSSTITDDPFWLWEDAKIQMMTEVQSW PYSFSASEDFQKSSNVSGRLLVLDSKEYTPANGAYVGLAPPGDAGSWQRECKDYQFWTRADDHGYFSINNVRTGTYNLYAWVPGFIGDYRYDAVINITSG SFIEMGDLVYEPPRXGQTLWEIGIPDRSAAEFYVPDPHPKFRQYGLWNGYAELYPDEDLVYIVGVSDYAKDWFFAQVPRKTDNGHEGTTWQIKFELKNVD RNSCYNLRVAIASATLAELQVRINNPDSRRPLFTSGLIGRENSVARHGIHGIYWLYNINIKT | |||
| PL4 | 589 | 1217 | 0 |
| VELLVQDHHVMMDNGILQVTLSKPEGIVTGIRYNGIDNLLEIRNDESNRGYWDLVWNSATTGTTGIFDVIKGTSFTIIMENEEQVELSFTRTWDPSQGGK LVPLNIDKRFIMLRGSSGFYSYAIYEHLKDWPAFELGETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGQALAYPEAVLLVNPVEPELKGEVDDK YQYSCDNKDNKVHGWICTEPPVGFWQITPSTEFRSGGPFKQNLTSHVGPTTLAMFLSAHYAGEDLVPKFAAGEEWKKVFGPVFMYVNSAYEGNDPLSLWE DAKSQMEMEVQCWPYSFPASEEFPKSYQRGNVRGRLLIQDRYISNDYISVNGAYVGLALPGDIGSWQRECKDYQFWTTTDEDGYFCINGIRTGDYNLNAS VPGFIGDYHYDVVMTITSATKVLKRKKEINSASNVGCDIDMGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLFVNHPDRFRQYGLWERYSE LYSDQDLVYTVGVSDYSKDWFFAQVTRKNEDNKYQGTTWQIKFNLDNLDQTGSYKLRVALASATFSELQVRVNDPKANRPLFTSGMIGRDNSIARHGIHG LYWLYNVDVPSSRLVEGDNIIYLTQPRST | |||
| Full Sequence |
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| Protein Sequence Length: 1239 Download |
| MDNGILQVTL SNPDGIVTGI RYNGIDNLLE PLNKETNRGY WDLVWSAPGS KGIFDVIKGT 60 TFKVIVESEE QVELSFSKTW DCSLEGKYVP LNIYKRFVML RGSSGFYSYG IYEHLKDWPD 120 FDIGETRITF KLRKDKFQYM AVSDNRQRYM PLPDDRLSEQ CQALAYPEAV LLVDPKMKDL 180 AGEXDDKYQY SCDSQDNKVH GWICTNPPVG FWQITPSDEF RSGGPLKQNL TSHVGPTTLA 240 MFLSSHYAGQ DLVPKFRGGE PWKKVFGPVF IYLNSSTITD DPFWLWEDAK IQMMTEVQSW 300 PYSFSASEDF QKSSNVSGRL LVLDSKEYTP ANGAYVGLAP PGDAGSWQRE CKDYQFWTRA 360 DDHGYFSINN VRTGTYNLYA WVPGFIGDYR YDAVINITSG SFIEMGDLVY EPPRXGQTLW 420 EIGIPDRSAA EFYVPDPHPK FRQYGLWNGY AELYPDEDLV YIVGVSDYAK DWFFAQVPRK 480 TDNGHEGTTW QIKFELKNVD RNSCYNLRVA IASATLAELQ VRINNPDSRR PLFTSGLIGR 540 ENSVARHGIH GIYWLYNINI KTDIYFHCCI EISSRNQLDR SSIMAPIGVE LLVQDHHVMM 600 DNGILQVTLS KPEGIVTGIR YNGIDNLLEI RNDESNRGYW DLVWNSATTG TTGIFDVIKG 660 TSFTIIMENE EQVELSFTRT WDPSQGGKLV PLNIDKRFIM LRGSSGFYSY AIYEHLKDWP 720 AFELGETRIA FKLRKDKFHY MAMADNRQRY MPLPDDRSPP RGQALAYPEA VLLVNPVEPE 780 LKGEVDDKYQ YSCDNKDNKV HGWICTEPPV GFWQITPSTE FRSGGPFKQN LTSHVGPTTL 840 AMFLSAHYAG EDLVPKFAAG EEWKKVFGPV FMYVNSAYEG NDPLSLWEDA KSQMEMEVQC 900 WPYSFPASEE FPKSYQRGNV RGRLLIQDRY ISNDYISVNG AYVGLALPGD IGSWQRECKD 960 YQFWTTTDED GYFCINGIRT GDYNLNASVP GFIGDYHYDV VMTITSATKV LKRKKEINSA 1020 SNVGCDIDMG DLVYEPPRDG PTLWEIGIPD RSAAEFYVPD PNPKYINKLF VNHPDRFRQY 1080 GLWERYSELY SDQDLVYTVG VSDYSKDWFF AQVTRKNEDN KYQGTTWQIK FNLDNLDQTG 1140 SYKLRVALAS ATFSELQVRV NDPKANRPLF TSGMIGRDNS IARHGIHGLY WLYNVDVPSS 1200 RLVEGDNIIY LTQPRSTGPF QGIMYDYLRF EGPSSPSSK |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10317 | RGL4_C | 2.0e-54 | 1044 | 1231 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-69 | 1 | 276 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 6.0e-74 | 593 | 877 | 289 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-92 | 1 | 183 | 183 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-99 | 584 | 785 | 202 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 584 | 1238 | 1 | 649 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 1 | 560 | 1 | 578 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301112.1 | 0 | 600 | 1232 | 1 | 613 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527353.1 | 0 | 1 | 560 | 17 | 597 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527353.1 | 0 | 588 | 1237 | 5 | 637 | lyase, putative [Ricinus communis] |
| Hydropathy |
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