| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000202902 |
| Family | PL1 |
| Protein Properties | Length: 240 Molecular Weight: 26175.1 Isoelectric Point: 9.0062 |
| Chromosome | Chromosome/Scaffold: 012126339 Start: 3884 End: 4606 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 106 | 238 | 1.2e-34 |
| QPLWIVFAKDMVITLKNELIMNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKGGNVRSTPTHIGKRRGCDGDAIAVFASSHVWIDHCF LARSADGLLDVTHASTAVTITNNYFSQHDKVSI | |||
| Full Sequence |
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| Protein Sequence Length: 240 Download |
| MASLAPLVLF LLCFLTYIAP TFQAYSPDYY TTPNITLKNI MNVVDSCWRT KSNWATNRRA 60 LADCAVGYGK DALGGKYGRT YVVTTSNDDS VNPKPGSLRY GVIQTQPLWI VFAKDMVITL 120 KNELIMNSFK TIDGRGAKVE IAYGPCITVQ GVSHVIIHGI SIHDCKPGKG GNVRSTPTHI 180 GKRRGCDGDA IAVFASSHVW IDHCFLARSA DGLLDVTHAS TAVTITNNYF SQHDKVSIKG 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 5.0e-7 | 189 | 240 | 61 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-20 | 121 | 240 | 143 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-28 | 115 | 240 | 137 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23207.1 | 0 | 41 | 240 | 1 | 200 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_172656.1 | 0 | 1 | 240 | 1 | 235 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O65388 | 0 | 1 | 240 | 1 | 235 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
| RefSeq | XP_002263615.1 | 0 | 7 | 240 | 6 | 249 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002331545.1 | 0 | 1 | 240 | 1 | 244 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 42 | 240 | 2 | 202 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 42 | 240 | 2 | 202 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000001 | 110 | 240 | 50 | 168 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00008 | 134 | 240 | 140 | 258 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 2o1d_A | 0.003 | 189 | 240 | 184 | 252 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 7 | 26 | ||||
| Signal Peptide | |||||
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| Cleavage Site | |||||
| 23 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| BQ519052 | 218 | 21 | 236 | 0 |
| EX093021 | 221 | 20 | 240 | 0 |
| EX087520 | 221 | 20 | 240 | 0 |
| FS081522 | 216 | 27 | 240 | 0 |
| AJ796115 | 199 | 40 | 238 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Picea abies | MA_10394547g0010 | MA_137974g0010 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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